PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74412
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 215aa    MW: 23907 Da    PI: 4.9343
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74412genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.28e-172972245
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
              + e ksn +vtfskRr+g++ KA+EL+ L +a++ +i++s+t +
  OMO74412 29 QLEKKSNLHVTFSKRRKGLFQKASELCLLSGAKIGIIVLSPTPR 72
              6789************************************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MTDDGKDGNK EGAASGKRTK GRQRIEIKQL EKKSNLHVTF SKRRKGLFQK ASELCLLSGA  60
KIGIIVLSPT PRQKPFCFGH PNIDKILDQY VSETQNPTDA AAVDDDDHDQ DGETPIADLS  120
GLEEIDKKFE GSVEMLEMEK KRGKDQMENN GGTFWWEEDI EGMGLEELEM YVNALEKLKK  180
NVIVRANALT MANVMETSSA LPGFAQNLSG FRGLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-34M-type_MADS family protein