PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO74358

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 681aa MW: 74343.2 Da PI: 6.1816

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74358	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	2.9e-09	422	459	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + OMO74358 422 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 459 664459******************************88 PP
2	BELL	130.7	4.8e-42	284	355	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai +qi OMO74358 284 ERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAINGQI 355 79********************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MATYYTGSNN QRDTAPMIYL RESMPGSYPE APVLPGNAMM YMNSGSFSDA FAGNSQQQSN 60 CIGIQAVEAS DSTSQQQEIL SNLGGSRVGE HDFGAWRDGR NEMLVMHSMG GPASILHSGQ 120 NLQGQGLSLS LGTQIPSGIQ MPSIPYRNPN SGFASFLGPN PSVSGEGGSR NSSSRDEQSR 180 NVEYLPPGFS GGNHDSAKGD LSPYGMSSIA RTIPNSKYLK AAQQLLDEVV NVRKALKQPD 240 GEKNQNSQEH QMKSSKDDDE GSKNVPSNQQ ESSNNSPKEL SHAERQELQN KLTKLLSMLD 300 EVDRRYKQYY HQMQIVVSSF DVIAGCGAAK PYTALALQTI SRHFRCLRDA INGQIRATRK 360 SLGEQDTSEN SKGVGITRLR YVDQQLRQQR ALQQLGMMQQ HAWRPQRGLP ESSVSILRAW 420 LFEHFLHPYP KDSDKIMLAR QTGLTRSQVS NWFINARVRL WKPMVEEMYK EEFVDAEMDS 480 NSSSENAVKA TKGDTMTSED KGEDLQQSGS SSATERCNTG HLMDSKSDHV PDVEMAGSTT 540 GAGFPNVTRG DAETEYGLLK LRAEQRPSVD DSSLFSDAIG HSDGGNDRFM AAAAAAYHMS 600 ELGRFGSGSG VSLTLGLQHC EGGSIPMSGG SHQSFVAMRG DDIYNPAASS VGAETADFEC 660 INPGNRQHRF SSSHLLHDFV A

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MATYYTGSNN QRDTAPMIYL RESMPGSYPE APVLPGNAMM YMNSGSFSDA FAGNSQQQSN  60
CIGIQAVEAS DSTSQQQEIL SNLGGSRVGE HDFGAWRDGR NEMLVMHSMG GPASILHSGQ  120
NLQGQGLSLS LGTQIPSGIQ MPSIPYRNPN SGFASFLGPN PSVSGEGGSR NSSSRDEQSR  180
NVEYLPPGFS GGNHDSAKGD LSPYGMSSIA RTIPNSKYLK AAQQLLDEVV NVRKALKQPD  240
GEKNQNSQEH QMKSSKDDDE GSKNVPSNQQ ESSNNSPKEL SHAERQELQN KLTKLLSMLD  300
EVDRRYKQYY HQMQIVVSSF DVIAGCGAAK PYTALALQTI SRHFRCLRDA INGQIRATRK  360
SLGEQDTSEN SKGVGITRLR YVDQQLRQQR ALQQLGMMQQ HAWRPQRGLP ESSVSILRAW  420
LFEHFLHPYP KDSDKIMLAR QTGLTRSQVS NWFINARVRL WKPMVEEMYK EEFVDAEMDS  480
NSSSENAVKA TKGDTMTSED KGEDLQQSGS SSATERCNTG HLMDSKSDHV PDVEMAGSTT  540
GAGFPNVTRG DAETEYGLLK LRAEQRPSVD DSSLFSDAIG HSDGGNDRFM AAAAAAYHMS  600
ELGRFGSGSG VSLTLGLQHC EGGSIPMSGG SHQSFVAMRG DDIYNPAASS VGAETADFEC  660
INPGNRQHRF SSSHLLHDFV A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-135	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO74358