PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO74343

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 426aa MW: 46891 Da PI: 5.3696

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74343	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.6e-10	228	275	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OMO74343 228 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 275 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MPEMLQCSDM TVLERQRARL KWQLEEQQLQ QEQQESYFSE LSGVFQGGLM TGDSVLGDMV 60 MARQLKPDPG LDTASWPHDL GKVDMPAMGF GPCGFGNGPS FDMNYAISRT ASCPPAVAAA 120 VAAEAVELKA KESEKMGTSA VGRENFKKRK ADKLQNSKVV VEDDSKKIKA CAEEGDSKIT 180 GPNTNKSSSS NNKKETSTDT SKENSKVTEV QKPDYIHVRA RRGQATDSHS LAERVRREKI 240 SERMKYLQDL VPGCNKITGK AGMLDEIINY VQSLQRQVEF LSMKLAAVNP RLDFNIDNLF 300 AKEVFPSCST NFPTVGMSAE MANPTYVQFN PVQQMGSCCG MEMGINSQDM ALRRTISAPV 360 SIPDASFFDS SCFPQIQPSG TWDVELQNLY NVAFDQGRST TTTPTSFPSH QPFAGSIEAG 420 NLKMEM

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MPEMLQCSDM TVLERQRARL KWQLEEQQLQ QEQQESYFSE LSGVFQGGLM TGDSVLGDMV  60
MARQLKPDPG LDTASWPHDL GKVDMPAMGF GPCGFGNGPS FDMNYAISRT ASCPPAVAAA  120
VAAEAVELKA KESEKMGTSA VGRENFKKRK ADKLQNSKVV VEDDSKKIKA CAEEGDSKIT  180
GPNTNKSSSS NNKKETSTDT SKENSKVTEV QKPDYIHVRA RRGQATDSHS LAERVRREKI  240
SERMKYLQDL VPGCNKITGK AGMLDEIINY VQSLQRQVEF LSMKLAAVNP RLDFNIDNLF  300
AKEVFPSCST NFPTVGMSAE MANPTYVQFN PVQQMGSCCG MEMGINSQDM ALRRTISAPV  360
SIPDASFFDS SCFPQIQPSG TWDVELQNLY NVAFDQGRST TTTPTSFPSH QPFAGSIEAG  420
NLKMEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	7e-63	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO74343