PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO74257

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 441aa MW: 49351.3 Da PI: 5.6746

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74257	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.3e-09	267	320	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 +++ hn+ Er RR ++ ++ L llP + +++skK s i +Av+YI +L OMO74257 267 KKQQHNAKERVRRMKLHASYLALGALLPAD-STRSKKrKSAPHIIDRAVDYIPEL 320 6899***********************7.4788887************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MSSPYLANFS TITEAADDLW PLTQEDNMTS IQLVLEPGQE GKSIGKEVLG NGNADGKQEK 60 HQCPFPIGNG KFHSISFLEQ ENSALDDHNM NMNELQLQYG HCSDRDHLLS PLYGASDYAC 120 SLIQGNSTNY MPTENNARST AELDSSIFGL EPVLEPNIIN NCLSAALEQL EDSDEQLDLL 180 LQESSTSFLS HVDEKTKDDD QTDLSFDPDQ QELGADPCNG KGLSTAKRVI NAKTSRRRNN 240 YRLKGLQAAG NNIKEVQLQG ELGSTVKKQQ HNAKERVRRM KLHASYLALG ALLPADSTRS 300 KKRKSAPHII DRAVDYIPEL EEEIEKLTLR KNHMLAKIKN KQPLNQNPDF QLHQDPSVLV 360 HEIKQGEFII QICRQKHPGD AFSNLLHKVE EEKGMSILSA STLQVSDYGL CYHLHIQINE 420 ISLNGANHLT SLREKVISWL H

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MSSPYLANFS TITEAADDLW PLTQEDNMTS IQLVLEPGQE GKSIGKEVLG NGNADGKQEK  60
HQCPFPIGNG KFHSISFLEQ ENSALDDHNM NMNELQLQYG HCSDRDHLLS PLYGASDYAC  120
SLIQGNSTNY MPTENNARST AELDSSIFGL EPVLEPNIIN NCLSAALEQL EDSDEQLDLL  180
LQESSTSFLS HVDEKTKDDD QTDLSFDPDQ QELGADPCNG KGLSTAKRVI NAKTSRRRNN  240
YRLKGLQAAG NNIKEVQLQG ELGSTVKKQQ HNAKERVRRM KLHASYLALG ALLPADSTRS  300
KKRKSAPHII DRAVDYIPEL EEEIEKLTLR KNHMLAKIKN KQPLNQNPDF QLHQDPSVLV  360
HEIKQGEFII QICRQKHPGD AFSNLLHKVE EEKGMSILSA STLQVSDYGL CYHLHIQINE  420
ISLNGANHLT SLREKVISWL H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	2e-33	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO74257