PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74096
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 313aa    MW: 34452.1 Da    PI: 6.2401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74096genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1280127455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h   Er RR+++++ f++L  llP++     +K +K++i+ +Av++Ik Lq
  OMO74096  80 MHIWTERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNHIKTLQ 127
               56678*********************6....39******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MSEEVGGHES LSLWENQLWV NVSNSDNTNS GGGSDEKSNS AAKINQQEEE TGLQDDETQK  60
KNKRRGKAAA AAGESSDHEM HIWTERERRK KMRNMFSNLH ALLPQLPPKA DKSTIVDEAV  120
NHIKTLQQTL QKLQKQKLER LQLQSGISFG YNNEPPSMSN LTTTKKQAFE SSREAFLADQ  180
VSSNDQQLNV SASNNTFSSS ISSVSNDHQL FPVSFQTWTS SNVVLNLCGN NQAQISVCSA  240
KKPGLFTSIC YILEKHKIGV ISAHVSSSNS NQTMFMIQAH AGGEGCNQMS EGFDQVEETF  300
KQAAAEIMSC VSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-44bHLH family protein