PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO74067

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 415aa MW: 46841.9 Da PI: 7.1872

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74067	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.1	6.9e-18	54	142	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k++++s+v +l lp +f++ h+ k ++ +tledesg++++ ++i ++ + l++GWk F ++L egD++vF+l+++s+f +v ++r OMO74067 54 MKTMVRSNVRHGFWLHLPMPFCKLHMPK--HDTSMTLEDESGKEYKATYIAER----TALSAGWKAFSAGHKLVEGDILVFHLVSSSKF--KVYIVR 142 699*****************999755..5568***********4444....45**********************998888..777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
METETEKSQI SEILLDPDNG NPQDIKELFL GFACSVPVSG LGFTGFGDLG FGCMKTMVRS 60 NVRHGFWLHL PMPFCKLHMP KHDTSMTLED ESGKEYKATY IAERTALSAG WKAFSAGHKL 120 VEGDILVFHL VSSSKFKVYI VRAFKSKKVD GNFSSLNVNV HAKPIRSRRM KRRKRTAKNA 180 GCLELFPLNL PSANVENNSL MLLDTKNEQL VDQSENDSKD LSSGLVDGIR SLASIIDFQE 240 VKSIDSFIIT VNGSRIELSE HHKTKYYELC CSQNSFLHDH LLKSISSTLA AEIIAQTVKI 300 AEAIKGCKLS TSQADYLLWD KTLKGFELLG MNVGFLQARL NRLMTLSLEL QEAVESERYR 360 ISLEQDHMKD EKKCLEVKLM KLKEAMHRLD AEIESLKVNA EKHELMFQEE VNAAW

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

METETEKSQI SEILLDPDNG NPQDIKELFL GFACSVPVSG LGFTGFGDLG FGCMKTMVRS  60
NVRHGFWLHL PMPFCKLHMP KHDTSMTLED ESGKEYKATY IAERTALSAG WKAFSAGHKL  120
VEGDILVFHL VSSSKFKVYI VRAFKSKKVD GNFSSLNVNV HAKPIRSRRM KRRKRTAKNA  180
GCLELFPLNL PSANVENNSL MLLDTKNEQL VDQSENDSKD LSSGLVDGIR SLASIIDFQE  240
VKSIDSFIIT VNGSRIELSE HHKTKYYELC CSQNSFLHDH LLKSISSTLA AEIIAQTVKI  300
AEAIKGCKLS TSQADYLLWD KTLKGFELLG MNVGFLQARL NRLMTLSLEL QEAVESERYR  360
ISLEQDHMKD EKKCLEVKLM KLKEAMHRLD AEIESLKVNA EKHELMFQEE VNAAW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-32	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO74067