PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO73963
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 278aa    MW: 29755.7 Da    PI: 6.5938
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO73963genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000251722111054
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               + R ++i +++  L++l+ +      +K + a++L +A+ YI+ L
  OMO73963 172 KVRKEKIGDRITALQQLVSPF-----GKTDTASVLHEAMGYIRFL 211
               5688999************98.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MAETDDQGFE GDQETSAKTS SFSQLLFGGD DDVVVGLDLG QRFNYTCSSF PGLHLEKTPK  60
MLCFGDYQNH ADHAEIVTFG ESAANNATTK TAVSTPQRSG VTCSNDSSSA SSGNNSKSVK  120
PAPSKSNNRK RNGGRESEHC GDANTVTAQP PAQKPNKKSK AENPASSSGH AKVRKEKIGD  180
RITALQQLVS PFGKTDTASV LHEAMGYIRF LHDQVQVLCS PYLQHLADDG ENVSEESRND  240
LKSRGLCLVP VACTMHVANS NGADFWSPAM GNNNVTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-51bHLH family protein