PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO73927

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 263aa MW: 27913.8 Da PI: 7.4999

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO73927	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H OMO73927 95 YKCSVCNKAFPSYQALGGHKASH 117 9***********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MALEALNSPT TATPFSNKYE DIDSNYLESW KKGKRSKRPR SDSPPTEEEY LALCLIMLAR 60 GSTNASSSSA VNGSDQSDHK AAAAPPAPPA LKLSYKCSVC NKAFPSYQAL GGHKASHRKP 120 STDAAATATT GDNNPSTTST TTNSGVSGSG RTHECSICHK TFPTGQALGG HKRCHYEGGN 180 NNSNKSGSAS VSVSGVTLSD GGALSQSHRV DFDFDLNLPA LPDFCGENKD GRLSQIYAEE 240 EVESPLPTKK PRFLITKEEK LLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	1e-49	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO73927