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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OMO72796 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | SRS | ||||||||
| Protein Properties | Length: 324aa MW: 33188.7 Da PI: 8.4169 | ||||||||
| Description | SRS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF702 | 222.2 | 1e-68 | 106 | 266 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskkelet 102
+++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq ++aa + aaa + +++ +k++r +++++++s+t++s+++++++++t
OMO72796 106 SGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCHTHVKSTWVPAARRRERQLMAAAVVTPAAAGSsaSTSGAKKPRL-ITSQTTTTSHTSTSNTTPPRSFDT 205
5679*********************************************999999888777766224455555554.5788899999************** PP
DUF702 103 ss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
ss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e
OMO72796 206 SSshqdvgfkesLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVE 266
999********************************************************98 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 324 aa Download sequence |
MANDQINGPN AATALGVGVG VGVIPLLAAT PCLAPQNVED PDLLNNNGRN KLSGMQLWQN 60 QNSSPHNYLK KPSSLPDSNN SCSMNLIQSS GGGGMGGGSG GSGSSSGTTC QDCGNQAKKD 120 CSHRRCRTCC KSRGFDCHTH VKSTWVPAAR RRERQLMAAA VVTPAAAGSS ASTSGAKKPR 180 LITSQTTTTS HTSTSNTTPP RSFDTSSSHQ DVGFKESLPG QVRAPAVFKC VRVTAVEDGE 240 DEYAYQAVVK IGGHVFKGFL YDQGVEGREG FPNMSELHLG GGGGGPGGGR NGGSSSSPVL 300 DPSEVYAATG GGLLGGSSYG NPIN |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G12330.1 | 1e-69 | SRS family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO72796 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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