PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO72606
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 479aa    MW: 52435.2 Da    PI: 9.2896
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO72606genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.3e-33199255360
               -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
               DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  OMO72606 199 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 255
               9***************************************.***************85 PP
2WRKY105.62.5e-33398455259
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k+ver+++dp+++++tYeg+Hnh+
  OMO72606 398 GDGFRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKHVERASDDPRAFITTYEGKHNHD 455
               6********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    
MEVKEAEKIA IAKPVASRPT CSGFKSFSEL LASAINASPS NTCPETAVPA IRPKTVRFKP  60
VLLNRAPSAV VSSQAELSGI GVPSSSSDKV LKSVVKPTVV YKPQAKLVSK TTVSLLANMG  120
NFSANINKQM LQSTEASIQH PNQEKRNFRS RVTPNLHHST PSAAETNQTS EPSKLGSESM  180
EEDPKSLPAA ANSDRPSYDG YNWRKYGQKQ VKGSEYPRSY YKCTHPNCPV KKKVERSFDG  240
QIAEIVYKGE HNHSKPQPAK RNSSGTQGLG ITSEGTGQDT DNSLWSNNIN PNERNESSEG  300
RVENQNEVGL SAFPSYQAKA MLPYEHVATA AVNAVGTSEN SVGLSGECEE GSKEGEDEEP  360
RSKRRKGENQ SSEVGTSGEG IQEPRVVVQS SNDSEIMGDG FRWRKYGQKV VKGNPYPRSY  420
YRCTSLKCNV RKHVERASDD PRAFITTYEG KHNHDMPLRS MNHVASDPDS NLPASKDKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-117WRKY family protein