PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO71608
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 534aa    MW: 60867.4 Da    PI: 7.0111
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO71608genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-114394874287
               TS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
        B3  42 sgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
               +g++W+ ++     ++k +r ++++GW  Fv++n+Lk gD ++F+l+++
  OMO71608 439 DGKEWNARYFAyktNNKYSRAMISNGWHVFVRDNELKLGDACLFELTDQ 487
               79******9445777777889************************8764 PP
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    
MSRERPRRGT LPPVQENIDK LENVINEGNF YGAQQMYKSI SARYVSAQRY SEALDLLHSG  60
ACLQLKHGQS CMQMYREVAP ACLKFGLRGW LDTSPHGFYF KSGGKIYKAF PQLPVPSNMA  120
DCDDVQEITE AVGAAKTRVE GCTSFLRAAI KWSAESGAYK YGDPQLHTML AEYIYSQCPE  180
LDMARVSFHF VRGNNPKKLA STLVNFMGKC YPGEDDIAIA RAVLLYTSMG NLRDANFLLD  240
EIKRQVASQN VDFPQSHLIQ FITFLLLTLE RDALPLFNTL RQNYKSSIDR DPTLNEFLDD  300
TAEKFYGVQR RNPLQGMFGD LFKFRLLSDD MMNNKIATAQ ISRFAVRDLE CRNRTWKTQQ  360
GKRSRRGNHN SADRLNESNQ EAGDSQSVEM GVEGLNHINQ DQEEADHQDN DSFEILNQTP  420
PESKSENKCL RRSNRIAVDG KEWNARYFAY KTNNKYSRAM ISNGWHVFVR DNELKLGDAC  480
LFELTDQFNQ STEYDITLNI VIYCANEDSN CSSSSGKEPT TRRGYEFALA KSRL