PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO71599

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NF-YB

Protein Properties

Length: 526aa MW: 58331.4 Da PI: 6.6789

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO71599	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	174.4	1.2e-54	402	495	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 vreqdr+lPian+srimkk+lP+n+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa++tlGfe+y+eplk+yl++yre + OMO71599 402 VREQDRYLPIANISRIMKKALPTNGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMSTLGFEEYIEPLKIYLARYREGD 495 59*****************************************************************************************966 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MNGTRFVFSN GVVLGSAEAP PVATFLESLP GAYTTTRTHE NGTTLLFWER HLKRLANSTR 60 ILLNSKPELI FKPNKKNPLF FSPLSISSSS KWDSWFRSLI NNSMNQVLPI ALNERSKGQE 120 LAVTALVSGD LEKLKEMKNV DNNGVLGVLD VHFHIGSYVP PVFGIEENGA HLALVGPGRD 180 VAAAKYSDWV RLRKPLDKFR PPLVTELLLS NDGDRILEGC ITNFFVICQR DKSEAQWNYL 240 HDYDNAYPVE VQTAPITDGV LPGVIRQLVI EVCLSKGIPV REVAPSWEKH ELWEEAFITN 300 SLRVLQHVET IKVPRSWESL QSKCSEKISW MEKIFEGPGT ITKVIQVSIS LSSLINPCNY 360 VLFSMYGYDM FVGDMADAMG PGSPAGGSHE SGGEQSSPHS NVREQDRYLP IANISRIMKK 420 ALPTNGKIAK DAKDTVQECV SEFISFITSE ASDKCQKEKR KTINGDDLLW AMSTLGFEEY 480 IEPLKIYLAR YREGDTKGSA RGGDGSLRRD ASGGVAAQNA QVQPGY

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MNGTRFVFSN GVVLGSAEAP PVATFLESLP GAYTTTRTHE NGTTLLFWER HLKRLANSTR  60
ILLNSKPELI FKPNKKNPLF FSPLSISSSS KWDSWFRSLI NNSMNQVLPI ALNERSKGQE  120
LAVTALVSGD LEKLKEMKNV DNNGVLGVLD VHFHIGSYVP PVFGIEENGA HLALVGPGRD  180
VAAAKYSDWV RLRKPLDKFR PPLVTELLLS NDGDRILEGC ITNFFVICQR DKSEAQWNYL  240
HDYDNAYPVE VQTAPITDGV LPGVIRQLVI EVCLSKGIPV REVAPSWEKH ELWEEAFITN  300
SLRVLQHVET IKVPRSWESL QSKCSEKISW MEKIFEGPGT ITKVIQVSIS LSSLINPCNY  360
VLFSMYGYDM FVGDMADAMG PGSPAGGSHE SGGEQSSPHS NVREQDRYLP IANISRIMKK  420
ALPTNGKIAK DAKDTVQECV SEFISFITSE ASDKCQKEKR KTINGDDLLW AMSTLGFEEY  480
IEPLKIYLAR YREGDTKGSA RGGDGSLRRD ASGGVAAQNA QVQPGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	2e-67	NF-YB family protein

Link Out ? help Back to Top
Ensembl	OMO71599