PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO71570

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 1738aa MW: 190111 Da PI: 5.8555

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO71570	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.2e-08	817	858	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++ d + +G++ +++Ia + ++t +c+++++k OMO71570 817 PWTSEEKEIFMDKLAAFGKD-FRKIATFLD-HKTTADCIEFYYK 858 8***************99.*****.*********98 PP
2	Myb_DNA-binding	32.9	1.5e-10	1037	1076	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++g +R++ qck ++ OMO71570 1037 WTDEEKSAFLQAVSSYGKD-FAMISRCVG-TRSRDQCKVFFS 1076 ***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1738 aa Download sequence
MPPEPLPWDR KDFYKERKHD RTESQPQQTA RWRESSSMPS YQHGSFREFT RWGSASDFRR 60 PPGHGKQGNW HLFAEENGGH GYMPSRSGDR ILDDESFRQS VSRGDWKYSR NSSRESNRGS 120 YSQRDWRGHS WETNSVSPNT PGRPHDVNNE HRSVDDMLMY PSHTHSDFVN TWDQLQKDQH 180 DNKTSGVNGL GTGQRFEREN SVGSMDWKPL KWSRSGSLSS RGSGFSHSSS SKSLGGVDSG 240 EGKPELQQKN LTPVQSPSGD AAACVTSAAP SDETTSRKKP RLGWGEGLAK YEKKKVDIPD 300 TIIGRGVATI SAGNTEPINS VSSNFADKSP RVLGFSDCAS PATPSSVACS SSPGVEEKSF 360 GKAANIDNDV SNICGSPSLG SQNHLEASSF NLEKLDINSI ANMGSSLVDL LQSDDPCTVD 420 SSFVRSTGMS KLLVWKSDIL KALEVTETEI DSLETELKSL KADPGSRCPC PATSSSLPAE 480 ENGKACEEQE AVSNMIPRPA PLKIDHCDEV PEEMMPLCNG ILEEVNADGK DGDIDSPGTA 540 TSKFVELSCL EKAVATSDVL KLHECSGDLG SIQLTAVEEV IPEVPSSNKE EAGDLISVDV 600 SVLGKIDNDS EVPESLDSDA GRESSLCDVI LATNQELANS ASKVFDNLLP KDQFSIEISQ 660 IANLACRQVD SSIREQIAVR KRNLKFKERV LALKFKVFQH AWKEDMRSPS IRKYRAKSHK 720 KYEMGLRTIH GSHQKHRSSI RLRLTSPGNL SLVPDAEMIN FTSKLLSDSH LRLYRNTLKM 780 PALILDEKEK QVSKFISSNG LVEDPCAVEK ERALINPWTS EEKEIFMDKL AAFGKDFRKI 840 ATFLDHKTTA DCIEFYYKNH KSECFEKTKK KLDPSKQGKS SANTYLLTSG KKWSREFNAA 900 SLDVLGAASV IAAHAESGMR NRQTSSSRIF VGTRFDSKVS RVEDGIAERS NSFDIIVNDR 960 ETVAADVLAG ICGSLSSEAM SSCITSSADP GESYHREWRC HKVDSVVRRP STSDVTQNVD 1020 DDTCSDESCG DMDPADWTDE EKSAFLQAVS SYGKDFAMIS RCVGTRSRDQ CKVFFSKARK 1080 CLGLDSLHPR TRNMCTPMSD DANGGGSDME DAGFVESSVV CNNKLGSKVE DLPSAMVSMN 1140 VDESDPAGEV RLQTDLNNSE GKNGRHEDRI DSEAVETMVS DVVQPEQISE SVGDMDVDSD 1200 KNEPVQVRTG VTEQCGAVSV SASVQEAVDS SLPGLGAVIN AKIIASCSTG GIRDDLEAQE 1260 TPLAKNGSDE PGLKCSAEMS SQSISRLDSN KSREESVDRD SCSSFSFDTK GLHQVPHLDS 1320 AAKPSVVLLP KENPSATGTA LHNSDAIRCE RICNQDRLSS TCDHQENEEK QSQKSVSGDE 1380 SDRLSAKASV NHAESHQKLR GYHLQVSNAK EMNGDVSCSQ LPEVKSLSTS ERGVAGPYVA 1440 QDCYLQKCNG SKSVPELSLP MQKSEQARDH PKTHSRSLSD TEKPCSNGNV KLFGQILKSS 1500 SQDDSKVAHV PKQSTKPSSL KFTGHNNVDG NASFSKVERK NCHVPETVPK RSYGFWDGNR 1560 IQTGLSSLPD SAILVAKYPA AFVNYPSSSS QMEQQALPSV VRSSERNLNG VSVFPSREIS 1620 SNNGVVDYQV YRSRDCTKVA PFTVDMKQRQ EMFSEMQRRN GFDAMPNLQQ QGRGVVGMNV 1680 VGRAGVLVGG GSCPSVSDPV AVLRRMQYPK TEQYSGQSGS IMSSREEESW RGKGDIGR

Sequence ? help Back to Top

Protein Sequence Length: 1738 aa Download sequence

MPPEPLPWDR KDFYKERKHD RTESQPQQTA RWRESSSMPS YQHGSFREFT RWGSASDFRR  60
PPGHGKQGNW HLFAEENGGH GYMPSRSGDR ILDDESFRQS VSRGDWKYSR NSSRESNRGS  120
YSQRDWRGHS WETNSVSPNT PGRPHDVNNE HRSVDDMLMY PSHTHSDFVN TWDQLQKDQH  180
DNKTSGVNGL GTGQRFEREN SVGSMDWKPL KWSRSGSLSS RGSGFSHSSS SKSLGGVDSG  240
EGKPELQQKN LTPVQSPSGD AAACVTSAAP SDETTSRKKP RLGWGEGLAK YEKKKVDIPD  300
TIIGRGVATI SAGNTEPINS VSSNFADKSP RVLGFSDCAS PATPSSVACS SSPGVEEKSF  360
GKAANIDNDV SNICGSPSLG SQNHLEASSF NLEKLDINSI ANMGSSLVDL LQSDDPCTVD  420
SSFVRSTGMS KLLVWKSDIL KALEVTETEI DSLETELKSL KADPGSRCPC PATSSSLPAE  480
ENGKACEEQE AVSNMIPRPA PLKIDHCDEV PEEMMPLCNG ILEEVNADGK DGDIDSPGTA  540
TSKFVELSCL EKAVATSDVL KLHECSGDLG SIQLTAVEEV IPEVPSSNKE EAGDLISVDV  600
SVLGKIDNDS EVPESLDSDA GRESSLCDVI LATNQELANS ASKVFDNLLP KDQFSIEISQ  660
IANLACRQVD SSIREQIAVR KRNLKFKERV LALKFKVFQH AWKEDMRSPS IRKYRAKSHK  720
KYEMGLRTIH GSHQKHRSSI RLRLTSPGNL SLVPDAEMIN FTSKLLSDSH LRLYRNTLKM  780
PALILDEKEK QVSKFISSNG LVEDPCAVEK ERALINPWTS EEKEIFMDKL AAFGKDFRKI  840
ATFLDHKTTA DCIEFYYKNH KSECFEKTKK KLDPSKQGKS SANTYLLTSG KKWSREFNAA  900
SLDVLGAASV IAAHAESGMR NRQTSSSRIF VGTRFDSKVS RVEDGIAERS NSFDIIVNDR  960
ETVAADVLAG ICGSLSSEAM SSCITSSADP GESYHREWRC HKVDSVVRRP STSDVTQNVD  1020
DDTCSDESCG DMDPADWTDE EKSAFLQAVS SYGKDFAMIS RCVGTRSRDQ CKVFFSKARK  1080
CLGLDSLHPR TRNMCTPMSD DANGGGSDME DAGFVESSVV CNNKLGSKVE DLPSAMVSMN  1140
VDESDPAGEV RLQTDLNNSE GKNGRHEDRI DSEAVETMVS DVVQPEQISE SVGDMDVDSD  1200
KNEPVQVRTG VTEQCGAVSV SASVQEAVDS SLPGLGAVIN AKIIASCSTG GIRDDLEAQE  1260
TPLAKNGSDE PGLKCSAEMS SQSISRLDSN KSREESVDRD SCSSFSFDTK GLHQVPHLDS  1320
AAKPSVVLLP KENPSATGTA LHNSDAIRCE RICNQDRLSS TCDHQENEEK QSQKSVSGDE  1380
SDRLSAKASV NHAESHQKLR GYHLQVSNAK EMNGDVSCSQ LPEVKSLSTS ERGVAGPYVA  1440
QDCYLQKCNG SKSVPELSLP MQKSEQARDH PKTHSRSLSD TEKPCSNGNV KLFGQILKSS  1500
SQDDSKVAHV PKQSTKPSSL KFTGHNNVDG NASFSKVERK NCHVPETVPK RSYGFWDGNR  1560
IQTGLSSLPD SAILVAKYPA AFVNYPSSSS QMEQQALPSV VRSSERNLNG VSVFPSREIS  1620
SNNGVVDYQV YRSRDCTKVA PFTVDMKQRQ EMFSEMQRRN GFDAMPNLQQ QGRGVVGMNV  1680
VGRAGVLVGG GSCPSVSDPV AVLRRMQYPK TEQYSGQSGS IMSSREEESW RGKGDIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO71570