PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO71429

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 388aa MW: 43607.8 Da PI: 7.0402

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO71429	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+d++++ G g+W++ ++ g++R++k+c++rw +yl OMO71429 14 KGPWTPEEDRILIDYIEKRGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.5	1.2e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++ +++ lG++ W+ Ia +++ gRt++++k++w+++l OMO71429 67 RGKFSEEEEQTIIYLHAVLGNK-WSVIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MGRTHCVDEN GLKKGPWTPE EDRILIDYIE KRGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEQTIIY LHAVLGNKWS VIATHLPGRT DNEIKNFWNT HLKKKLLQTG 120 IDPVTHRPRT DLNNNNILAN LPQLLAAAAT FSNLIMNNNN NNNTIPLDNA LKWQSDAAQF 180 LKIQLLHNIL QVLGSPNNGS SSTAPISMEA MNILTRPTFL ENNSQLYELL RMNSQLEGDS 240 NNNNLPFPNM APHELTQLHS NFLNLEASNS HQNDQLQLSD YHPLGQAMKE SSKICPNNIN 300 EHFTPSPSSS ANITTSSKLP KVIPGSPDRQ RPNSTAQNKI SPNDHISNHS STSTTFEAWG 360 DLMDDEASDS YLREIIIDQA SPQSWPFA

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MGRTHCVDEN GLKKGPWTPE EDRILIDYIE KRGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEQTIIY LHAVLGNKWS VIATHLPGRT DNEIKNFWNT HLKKKLLQTG  120
IDPVTHRPRT DLNNNNILAN LPQLLAAAAT FSNLIMNNNN NNNTIPLDNA LKWQSDAAQF  180
LKIQLLHNIL QVLGSPNNGS SSTAPISMEA MNILTRPTFL ENNSQLYELL RMNSQLEGDS  240
NNNNLPFPNM APHELTQLHS NFLNLEASNS HQNDQLQLSD YHPLGQAMKE SSKICPNNIN  300
EHFTPSPSSS ANITTSSKLP KVIPGSPDRQ RPNSTAQNKI SPNDHISNHS STSTTFEAWG  360
DLMDDEASDS YLREIIIDQA SPQSWPFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02940.1	7e-92	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO71429