PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO70627

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 198aa MW: 23150.1 Da PI: 8.4786

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO70627	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.1	4.8e-19	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++ +G+++Wk++a + g++R++k+c++rw +yl OMO70627 17 KGAWTAEEDRKLAEVIAVHGPKRWKSVAIKAGLNRCGKSCRLRWMNYL 64 79********************************************97 PP
2	Myb_DNA-binding	50.8	3.8e-16	70	115	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l OMO70627 70 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 115 78999***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MAEKMEENLS PRREINKGAW TAEEDRKLAE VIAVHGPKRW KSVAIKAGLN RCGKSCRLRW 60 MNYLRPNIKR GNISDQEEDL ILRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKIN 120 QKQKQSETSI KESCKAQKRE VNESIIAREE VKEDKTSVRS SEEEDSNNIS FDVDQFFDFS 180 NEDPLNLEWM SRFLEVDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	4e-56	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO70627