PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO70533 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19050 Da PI: 4.1711 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.4 | 1.2e-20 | 28 | 73 | 3 | 48 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 e++ + qv f kRr+g++KKAeE+S+LC+ae+avi +s+tg++y+ OMO70533 28 LEENNKSQVAFYKRRTGLFKKAEEISTLCGAEIAVIALSKTGRVYT 73 6788899**************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MEDAESNPPD AREKTKSRGR QRIEIKKLEE NNKSQVAFYK RRTGLFKKAE EISTLCGAEI 60 AVIALSKTGR VYTSNNAEAV VDRFLGESSD HGDIVNDEEI DEEEQDSGGG FSLDQTEEDL 120 SLIELLDYGM ALEDLRDTAA TRLEEINIMN SGSLLQWVTD QDVKKAEFLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 8e-20 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO70533 |