PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO69550

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 867aa MW: 97142.5 Da PI: 6.2032

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO69550	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58	1.8e-18	466	556	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k ++ps+v +l l k+f+ +h +ee+k+l+lede+g+++e k+ ++k + l++GW++F a++L egD++vF+l++ ++f +v ++rk OMO69550 466 FIKCMLPSHVAGGFWLGLAKEFCFKHL--PEEDKMLVLEDEEGKKYETKYLVDKVG----LSGGWRGFSIAHNLVEGDVCVFHLVKPTKF--KVYIVRK 556 89*******************9985..45778************666655....*********************9986777..8988886 PP

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence
MSTKHQLKRA PTPGKATVLA IGKAFPRQLL HQECLVEGYI RDTKCEDASI KEKLERLCKT 60 TTVKTRYTVM SKEILDKYPE LATEGSSTIK QRLEIANPAV VEMAVEASQA CIKEWGRAAT 120 DITHIIYVSS SEIRLPGGDL YLASQLGLKN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP 180 GSRVLLTTSE TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGTDPITCS ESPFMELNYA 240 VQQFLPGTQN VIDGHLSEEG INFKLGRDLP QKIEDNIEEF CRKLVSKANL TEFNDLFWAV 300 HPGGPAILNR LENTLKLNNG KLECSRRALM DYGNVSSNTI FYVMEYMKEE LKRQGSEEWG 360 LALAFGPGIT FEGQKMISVK VDPSSYYRTT AKRGRPPKCN LIRKKPSALD KMTLNQIVSH 420 SKEKAKCKKL KRATVDELYE NDDVKHAVME RAKEIQANLS STFPSFIKCM LPSHVAGGFW 480 LGLAKEFCFK HLPEEDKMLV LEDEEGKKYE TKYLVDKVGL SGGWRGFSIA HNLVEGDVCV 540 FHLVKPTKFK VYIVRKKGSE EVDVALGLLK LEASIQEMDC GKSSLSLVAI SFLCQLYNFI 600 KNLVQNPPYY GFSMFAETID KSLENMVCIE TTAKSLEEVH PLEIFPENDE KNDPTHSGSN 660 LEPIACHSEN DSEELGSEVL DGIRLCDSII DFKDVTSFED FNIIVNGLII NSELSKHLQV 720 KYYDLCCSQK SYLHDHLLEG LNCRLVCGII SETINIADAI RAAKLTTPQR NFETWNSTLK 780 SFQGLGMNVG FLSARLEQLM NLSLKSKRYQ EARDEQANVQ EEKMKLEAKL QEVTEALTRL 840 DGEIRSLEKE NADRVEILFR EAANAPW

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence

MSTKHQLKRA PTPGKATVLA IGKAFPRQLL HQECLVEGYI RDTKCEDASI KEKLERLCKT  60
TTVKTRYTVM SKEILDKYPE LATEGSSTIK QRLEIANPAV VEMAVEASQA CIKEWGRAAT  120
DITHIIYVSS SEIRLPGGDL YLASQLGLKN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP  180
GSRVLLTTSE TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGTDPITCS ESPFMELNYA  240
VQQFLPGTQN VIDGHLSEEG INFKLGRDLP QKIEDNIEEF CRKLVSKANL TEFNDLFWAV  300
HPGGPAILNR LENTLKLNNG KLECSRRALM DYGNVSSNTI FYVMEYMKEE LKRQGSEEWG  360
LALAFGPGIT FEGQKMISVK VDPSSYYRTT AKRGRPPKCN LIRKKPSALD KMTLNQIVSH  420
SKEKAKCKKL KRATVDELYE NDDVKHAVME RAKEIQANLS STFPSFIKCM LPSHVAGGFW  480
LGLAKEFCFK HLPEEDKMLV LEDEEGKKYE TKYLVDKVGL SGGWRGFSIA HNLVEGDVCV  540
FHLVKPTKFK VYIVRKKGSE EVDVALGLLK LEASIQEMDC GKSSLSLVAI SFLCQLYNFI  600
KNLVQNPPYY GFSMFAETID KSLENMVCIE TTAKSLEEVH PLEIFPENDE KNDPTHSGSN  660
LEPIACHSEN DSEELGSEVL DGIRLCDSII DFKDVTSFED FNIIVNGLII NSELSKHLQV  720
KYYDLCCSQK SYLHDHLLEG LNCRLVCGII SETINIADAI RAAKLTTPQR NFETWNSTLK  780
SFQGLGMNVG FLSARLEQLM NLSLKSKRYQ EARDEQANVQ EEKMKLEAKL QEVTEALTRL  840
DGEIRSLEKE NADRVEILFR EAANAPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-39	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO69550