PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69528
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GATA
Protein Properties Length: 274aa    MW: 30372.6 Da    PI: 7.9041
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69528genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.8e-18178212135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  OMO69528 178 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 212
               *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MDMYGLSTPD LFRIDDLLDF SNEELFSSAS TSTTSTTNDL FPPSETPLIT YGASASSSSS  60
SSSSAAFHPS FSPDFSHPDL CLPSDDVAEL EWLSQFVEDS FTDFPSNSLA GTLNPRNYDP  120
SFSSKARSKR SRAPTAMNTT TWTTASEAGL AHFTGKSKPK KEVQRQASPA AGGGVRRCTH  180
CASEKTPQWR TGPLGPKTLC NACGVRFKSG RLVPEYRPAA SPTFVLTQHS NSHRKVMELR  240
RQKELMRQPQ PQPQEQSFRH HQQHHRQQHD FEVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-71GATA family protein