PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO69522

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 428aa MW: 46342.5 Da PI: 6.516

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO69522	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49	1.1e-15	250	295	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq OMO69522 250 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 295 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MSQCVPSWDL DENPVTARHS LRSNSNSTAP DVPMSDYEVA ELTWENGQLA MHSLGPPRVP 60 TKPSLNSTAP TKYAWEKPAR ASGTLESIVN QATQFPYPTM TMDALVPCSN RSEDRTTHVM 120 ESIPGLGGTC VVGCSTRVGS CSGPAGNQEE EVLLTGKRAK EARVPVAPEW SSKDQSACAS 180 ASATFGRDSQ HVTVDTYEKD LGVGFTSTSP DNTSTKADDH DSREAGEEDK QKETGKSSVS 240 TKRSRAAAIH NQSERKRRDK INQRMKTLQK LVPNSSKTDK ASMLDEVIEY LKQLQAQVNM 300 MSRMNMPPMM LPMTMQQQLQ MSMMAPMGMG MGMGMGMAGM GVMDMNSMGR PNMSGISPVM 360 PNPFMTMTSW DGSGDRLQAA AAASAAVIPD PLSAFLACQS QPMTMEAYSR MAAMYQQMQQ 420 PPASSSKS

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MSQCVPSWDL DENPVTARHS LRSNSNSTAP DVPMSDYEVA ELTWENGQLA MHSLGPPRVP  60
TKPSLNSTAP TKYAWEKPAR ASGTLESIVN QATQFPYPTM TMDALVPCSN RSEDRTTHVM  120
ESIPGLGGTC VVGCSTRVGS CSGPAGNQEE EVLLTGKRAK EARVPVAPEW SSKDQSACAS  180
ASATFGRDSQ HVTVDTYEKD LGVGFTSTSP DNTSTKADDH DSREAGEEDK QKETGKSSVS  240
TKRSRAAAIH NQSERKRRDK INQRMKTLQK LVPNSSKTDK ASMLDEVIEY LKQLQAQVNM  300
MSRMNMPPMM LPMTMQQQLQ MSMMAPMGMG MGMGMGMAGM GVMDMNSMGR PNMSGISPVM  360
PNPFMTMTSW DGSGDRLQAA AAASAAVIPD PLSAFLACQS QPMTMEAYSR MAAMYQQMQQ  420
PPASSSKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	259	ERKRRD
2	255	260	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-97	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO69522