PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO69298

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CO-like

Protein Properties

Length: 377aa MW: 41345.3 Da PI: 6.5849

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO69298	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.6	1.3e-08	19	63	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..........Ht 38 ++C+ +++ + +fC++++ ++C +C + +H+g H+ OMO69298 19 KTCDSCKSAAAAIFCRTDSAFMCLNCDSRIHSGggnnklvssrHE 63 79*****************************87676666666665 PP
2	zf-B_box	26.7	1.1e-08	65	110	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ OMO69298 65 VWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 110 689*****************************66899999999986 PP
3	CCT	69.9	6.6e-24	301	344	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++ OMO69298 301 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 344 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGFDIASVKA GWSMGLAAKT CDSCKSAAAA IFCRTDSAFM CLNCDSRIHS GGGNNKLVSS 60 RHERVWMCEV CEQAPAAVTC KADAAALCVT CDADIHSANP LARRHERVPV EPFFDSADNI 120 VKSSPFSFLV PSTTDQTGTC QQEDVEPGSW LLPSNPNMNS KLGMEASNHV KTGDLFFSEM 180 DPFMDFDYQN SFQQPHHNNA AMDSVVPVQT KPTPIPVINN NNENCFDIDF CRSKLPTFSY 240 QTQSISHSVS SSSLEVGVVP DGNSLSDISY PFGRTMTDPN APISATTTAN NQAPQAGGID 300 REARVLRYRE KRKNRKFEKT IRYASRKAYA ESRPRIKGRF AKRTELDNEV DHLFNLPTSA 360 AAAAYMSDAQ YGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGFDIASVKA GWSMGLAAKT CDSCKSAAAA IFCRTDSAFM CLNCDSRIHS GGGNNKLVSS  60
RHERVWMCEV CEQAPAAVTC KADAAALCVT CDADIHSANP LARRHERVPV EPFFDSADNI  120
VKSSPFSFLV PSTTDQTGTC QQEDVEPGSW LLPSNPNMNS KLGMEASNHV KTGDLFFSEM  180
DPFMDFDYQN SFQQPHHNNA AMDSVVPVQT KPTPIPVINN NNENCFDIDF CRSKLPTFSY  240
QTQSISHSVS SSSLEVGVVP DGNSLSDISY PFGRTMTDPN APISATTTAN NQAPQAGGID  300
REARVLRYRE KRKNRKFEKT IRYASRKAYA ESRPRIKGRF AKRTELDNEV DHLFNLPTSA  360
AAAAYMSDAQ YGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-124	CO-like family protein

Link Out ? help Back to Top
Ensembl	OMO69298