PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69198
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 378aa    MW: 41346.7 Da    PI: 9.8053
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69198genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.65.2e-161151343
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
              i+n+s r  ++ kRr+g+lKK +ELS+LC+++++++i+s++
  OMO69198 11 IQNDSARRASLRKRRAGLLKKVSELSTLCGVDASIVIYSPD 51
              99*************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MTRKKVKLAW IQNDSARRAS LRKRRAGLLK KVSELSTLCG VDASIVIYSP DEIEPTVWPS  60
HAAVQEQFMN FKNMPELERL KKMNNQDTYL RDRISKTHAQ LSRTLRKNKE SQVNHLMIQI  120
DQGKNLDELN LSELSGLTWF FNEKMKEVNK RIEFHRQIPY APGTAPPPQD PKATNETTRL  180
GGTGNVGLEG DNGRTQTEAL LLEQWLEMMK NKALKGAGSS STRSEMGYPY HPFSGSIVPD  240
DHHLELPRHV FPGSSSSSVV PSDIKLGLGF SAGNFRGPSI DMVLPPLKPH AHGGETDHMG  300
LQLRGSRGGS HFGPLGSKIG MDLGLNHSDG HIGNSFAKSG LGLGLGLTPL GHLGSSNNGT  360
SSDVDVPFDG KTESKNSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAWIQNDSARRASLRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-31M-type_MADS family protein