PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69197
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 384aa    MW: 41982.2 Da    PI: 10.4873
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69197genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.13.1e-151051243
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
               ie++s r+ ++ kRr g++KK +EL +LC++++avi++s++
  OMO69197 10 WIESESARKASLKKRRLGLMKKVSELTTLCGVNAAVIVYSPD 51
              59**************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MTRQKVKLEW IESESARKAS LKKRRLGLMK KVSELTTLCG VNAAVIVYSP DEVNPMVWPS  60
PSMVHQQLAR FQGMPNSNRL KRMNNQKTYL KEKISKAVEQ LTKKQRRNKE AEMSHLMHQI  120
FNEGKKLDEL DRTEMEGLAW FAKEKMKEIR KRIEILQRNP SLGSVPNRQI PLPPQGVAAN  180
KTTQLGGGGI GNGTLIDPTD PNGCLMGNQG FMLNNNEPKS AFSSSLVRTE MGLTYYYYYP  240
PFAANAINGH MGLVPRHLFG VSSSVAVDMV VGLSSNGNFR GDAAAPTVMG RPPLFIRPHA  300
GLIDHMRLPL SGTSVGSSNF GSFGSDMGLG RNLFVGHIGS SSVGTDQNGL PPAPPSTIGT  360
SRINGTDGVG LPFDGKTWPS NFFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.18e-35M-type_MADS family protein