PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67972

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 718aa MW: 82207.6 Da PI: 7.9966

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67972	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.6	2.6e-14	533	583	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + e+Er+RR+++ + ++ L+ llP+ + ++K sK++ L A+ YIk+Lq OMO67972 533 LMREEIERNRRQEMATLYSSLQNLLPPeC---IKGKRSKSDHLNGAISYIKDLQ 583 56789********************88...*******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence
MKEDPSAKVQ QNFIHKTRDS KLLCKPPKKE LFELPQSPDC HSSLSSLIAL YLQENQELIA 60 IIPPWFFQRI LLVQVLDLSH TSIKSLPNSL PKLGALRKLL IRGCQLLMEL SPQVGQLEKL 120 EQLDLDETQI MNLPIDIGKL LCLRHLRVSF YPICGKNKSK WKILIHPETI SNLSQLTDLC 180 IDVDPADKRW DDSVEVVVKE VCNLKALRTL ILYIPELQLL QYMSSIYPSL SRFRFTVGRI 240 RRRIISRVPE EVEAKFRNWD KCFKFVNECD QMRTIIDEEM HCEGNEDDLS VKNVLGSLEY 300 LSIYYMENLE AICRGPTRYG CMSKLKLLGL HTCPQLSIVF SHPLLENLVN LEELLLQDCP 360 LVTSLVSDTY VKPMLSYEFL PSLKRLLLLY LPQLVTISNG LLIAPNLESI AFYNCPKLKR 420 ISKSELSSKT LKIIKGECQW WEDIKWNETE WGNRPDYLMR IFSPINNEEE VMTQIAKDGF 480 SFEAKAMIQN ESQQQLGRSS GDVYSKRDQQ PHKSLAMASD MKKNSHDAAK KKLMREEIER 540 NRRQEMATLY SSLQNLLPPE CIKGKRSKSD HLNGAISYIK DLQKRIEKLS ARRDELKKLF 600 SNESSPSNVV VRQSLDGLEV VMTNTGIGAQ ALSLSRVLQL LLEDGLNVVS CISTRIDGGF 660 VHTIQCEANN MKSVDVHIPG LLERKLHEEI SSLTQISPPQ YICNTLPFAR LFSCSKNI

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence

MKEDPSAKVQ QNFIHKTRDS KLLCKPPKKE LFELPQSPDC HSSLSSLIAL YLQENQELIA  60
IIPPWFFQRI LLVQVLDLSH TSIKSLPNSL PKLGALRKLL IRGCQLLMEL SPQVGQLEKL  120
EQLDLDETQI MNLPIDIGKL LCLRHLRVSF YPICGKNKSK WKILIHPETI SNLSQLTDLC  180
IDVDPADKRW DDSVEVVVKE VCNLKALRTL ILYIPELQLL QYMSSIYPSL SRFRFTVGRI  240
RRRIISRVPE EVEAKFRNWD KCFKFVNECD QMRTIIDEEM HCEGNEDDLS VKNVLGSLEY  300
LSIYYMENLE AICRGPTRYG CMSKLKLLGL HTCPQLSIVF SHPLLENLVN LEELLLQDCP  360
LVTSLVSDTY VKPMLSYEFL PSLKRLLLLY LPQLVTISNG LLIAPNLESI AFYNCPKLKR  420
ISKSELSSKT LKIIKGECQW WEDIKWNETE WGNRPDYLMR IFSPINNEEE VMTQIAKDGF  480
SFEAKAMIQN ESQQQLGRSS GDVYSKRDQQ PHKSLAMASD MKKNSHDAAK KKLMREEIER  540
NRRQEMATLY SSLQNLLPPE CIKGKRSKSD HLNGAISYIK DLQKRIEKLS ARRDELKKLF  600
SNESSPSNVV VRQSLDGLEV VMTNTGIGAQ ALSLSRVLQL LLEDGLNVVS CISTRIDGGF  660
VHTIQCEANN MKSVDVHIPG LLERKLHEEI SSLTQISPPQ YICNTLPFAR LFSCSKNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	2e-31	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO67972