PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67790
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 687aa    MW: 75747.3 Da    PI: 9.0878
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67790genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07600649147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
         OMO67790 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 649
                      6789999*******************9988889**************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    
MVLQKRLDYG FNGYQVPATP RATRSARKRV PFRKRCDDNQ ISAFDLLATV AGKLLLDKEG  60
TPASSNSLSD EEQSAALKTT VKEERQDGSK SLNVETCNQE SIERKFFVSE LVSETKNPNY  120
SSRESLSPQN DAHHGFASAI TIADCSERVD AQKLMKGKAE NDLGSLPCKV ETDSFACGTC  180
SDDCIKPESG NKGQTYEEVG VDRTHKISVG EVADKFPLED PVVVDGKPPS LVSSDSSGKA  240
PSCEDHYPLS SFPPKRDAVN VVSRDDDENS SGCTHPRPIK KSFRPTPRIG DRRIRKILAS  300
KYWKVGPRLK DVTFSNSGEN LKPAYCDRNS AYKRLRSERN YPFKKRKFLH CSSVSSSDEG  360
FSNEGNSNSP EKSINGHTSS VYSKMHGVAG ESSSLADQRK SFHSRDSHVK LRIKSFRVPE  420
LFIEIPESAT VGSLKRTVME AVTAILGGGL RVGVLLQGKK VRDDNKTLLQ TGISRDNQMD  480
ALGFSLEPNP SQTSPSLCPG GSPLMLPCDT PLPLARYPAT PGSVNQVTCD PSPEPHMPNL  540
GNFVESDHDS APSPTDMSLD KSTTDSKALV AIPAMSVEAL TVLPAHRKSK RSEVVQRRIR  600
RPFSVAEVEA LVQAVEKLGT GRWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR  660
RGEPVPQELL DRVLTAHAYW SQQQLKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-162MYB_related family protein