PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO67685

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 170aa MW: 18439.3 Da PI: 8.9244

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67685	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.0003	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k+Fs+ L H +H OMO67685 40 FACKTCNKTFSSFQALGGHRASH 62 78**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MTVKRGRDVV EAMDMANCLM LLSKVGQTDS SKDNSQGRVF ACKTCNKTFS SFQALGGHRA 60 SHKKPKHGGA GDSVADVPVS PKKPKTHECS ICGLEFPIGQ ALGGHMRRHR ATSNNELLVT 120 RDLLPEMKKS RVDETDLCLD LNLAPYGTDL ELKLGKVAPP PTTPVVHCFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59820.1	7e-42	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO67685