PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67376

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 410aa MW: 46068.4 Da PI: 7.2945

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67376	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.9	4e-36	46	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........sgyWka 85 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ + +W++ OMO67376 46 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggETRWHK 144 799**********.99*****5553344444434666646******.555666799**************73334555544778* PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l OMO67376 145 TGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 188 *******.999*******5547999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MNKSNLGSVS SSDLIDAKLE EHQLCGSKQC PGCGHKLEGK PDWLGLPAGV KFDPTDQELI 60 EHLEAKVEAK DMKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT 120 TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN 180 WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRSA ANLETGGSNV VVVDPNNSRR 240 DSGSGSCSSK EVNISHRDHD HQVSGSGVAA ALSSFAGAID IQQLKSDHFS FTPFRKSFDE 300 VGIAEASAAR EAQTQGTCEE IREHPHQHQH PHVRPHHMTH DQQQQQPPPH HHHTDHPIAA 360 TTAFHISRPS HPISTIISPP PLHHTSIILD EDSFHVSRIM LQNETFQFNQ

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MNKSNLGSVS SSDLIDAKLE EHQLCGSKQC PGCGHKLEGK PDWLGLPAGV KFDPTDQELI  60
EHLEAKVEAK DMKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN  180
WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRSA ANLETGGSNV VVVDPNNSRR  240
DSGSGSCSSK EVNISHRDHD HQVSGSGVAA ALSSFAGAID IQQLKSDHFS FTPFRKSFDE  300
VGIAEASAAR EAQTQGTCEE IREHPHQHQH PHVRPHHMTH DQQQQQPPPH HHHTDHPIAA  360
TTAFHISRPS HPISTIISPP PLHHTSIILD EDSFHVSRIM LQNETFQFNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-148	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO67376