PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO67001

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Nin-like

Protein Properties

Length: 699aa MW: 79197 Da PI: 7.3245

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67001	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	26.6	1.2e-08	226	276	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqy.GIkRWPhRkiksl 52 k++ le+l++ ++l +AA +Lg+c T++ +i +y RWP+Rk++sl OMO67001 226 KTMPLEQLKEWYHLRRDEAAVKLGICETAVTKIYNKYyPDGRWPYRKVNSL 276 67889*********************9988877651567******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MAAGPNRNDT MKNVMAMDTQ NLNPSSSSDA MEIESFLLSD CCAPVPSDSS SDSKIVKQIT 60 HHKAGLVRIL KLHGDSKLGL FYYATDAVHV TAPQYHYATT FSEKFEFNSN KEAAIFLSNY 120 FKLREQEGYE YRYDQDPPPL FYKILSMRPD DCSSTATTLS ADPGPSVAAA TANYEANLSD 180 QGASPNSNYD DEGELDMAAT NSSQAANRKY KRRREFDLAE QRKLIKTMPL EQLKEWYHLR 240 RDEAAVKLGI CETAVTKIYN KYYPDGRWPY RKVNSLIKEM RKLRKLKTNP GERSVDEIVR 300 EMDKTKQMLD AIYETDSLEK KDMGSVQTVV CVKRVKQDEP QDWDESMPLP GDIIEGFAQY 360 DADELFQAVK AKSELSSQLG KISQKVETIW VKVRRGDGTH KLRVRVVVEK SSMLHKKYTI 420 RAARDDRHVA VLGDLTIEQC TTLQEMSRRV VNVDYRGFNK KEMKYDWKKK LATYLPDQGS 480 TVISSILFLP FQDEYYIEPT ISRCMAWFTA AVSSGVPLVF VNIQTEQIVT SKLTNLTGKE 540 RSRGKQQNNT RTVELVQGIR LWFLPGVEEV SLEMIPQPGE SRFGMDIKRT DEEFICVYSV 600 TKGSAADRAG LQQLLEEASA KSHLLIISRL QGKSLMPSSV SSAGFIHCCD HNEIKDTLTS 660 AINQMDIIQL HIMAWPNQTR PNNTLKAIAA ALLRPPDEY

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MAAGPNRNDT MKNVMAMDTQ NLNPSSSSDA MEIESFLLSD CCAPVPSDSS SDSKIVKQIT  60
HHKAGLVRIL KLHGDSKLGL FYYATDAVHV TAPQYHYATT FSEKFEFNSN KEAAIFLSNY  120
FKLREQEGYE YRYDQDPPPL FYKILSMRPD DCSSTATTLS ADPGPSVAAA TANYEANLSD  180
QGASPNSNYD DEGELDMAAT NSSQAANRKY KRRREFDLAE QRKLIKTMPL EQLKEWYHLR  240
RDEAAVKLGI CETAVTKIYN KYYPDGRWPY RKVNSLIKEM RKLRKLKTNP GERSVDEIVR  300
EMDKTKQMLD AIYETDSLEK KDMGSVQTVV CVKRVKQDEP QDWDESMPLP GDIIEGFAQY  360
DADELFQAVK AKSELSSQLG KISQKVETIW VKVRRGDGTH KLRVRVVVEK SSMLHKKYTI  420
RAARDDRHVA VLGDLTIEQC TTLQEMSRRV VNVDYRGFNK KEMKYDWKKK LATYLPDQGS  480
TVISSILFLP FQDEYYIEPT ISRCMAWFTA AVSSGVPLVF VNIQTEQIVT SKLTNLTGKE  540
RSRGKQQNNT RTVELVQGIR LWFLPGVEEV SLEMIPQPGE SRFGMDIKRT DEEFICVYSV  600
TKGSAADRAG LQQLLEEASA KSHLLIISRL QGKSLMPSSV SSAGFIHCCD HNEIKDTLTS  660
AINQMDIIQL HIMAWPNQTR PNNTLKAIAA ALLRPPDEY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	214	NRKYKRRR
2	208	215	RKYKRRRE

Link Out ? help Back to Top
Ensembl	OMO67001