PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO66950

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 825aa MW: 90882.2 Da PI: 9.3511

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66950	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.4e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H OMO66950 73 FICEICNKGFQRDQNLQLHRRGH 95 89******************988 PP
2	zf-C2H2	11.7	0.00079	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + OMO66950 150 WKCEKCSKRYAVQSDWKAHSKIC 172 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence
MMKGLVMDES MSNLTSTSGE ISASSSATRI ETTFASTNQA PPLKKKRSLP GNPDPDAEVI 60 ALSPKSLLAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRPKMEVI RKKVYVCPET 120 TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK ICGTKEYRCD 180 CGTLFSRRDS FITHRAFCDA LAEESARAIP TLPNSLLSSS QQQVEIAGSS VSHNLSTLQQ 240 QQPQVFHSQA LQALAVKREQ DITYLLSGRS VAAADHSLPP WLACSSSFLD PLSQNIHENP 300 SQTQNPSSTT TTLAPFQTPT AASSPISPHM SATALLQKAA QMGVTMSSNK PLQSPAPVAM 360 QRPHHMSGTA GFIGSTSNPA GSAVGLSARD HGLAFFGNKA AAMEQVVAAT NSTAGAPSLL 420 HDMMSSLSST SGFDGSSSSF EQSFNGIFNP KLLGNNSNNF QEIHQQNFQK TAESQLSRSE 480 NNHERRGSSV SSNIIGGNSN NDGLTRDFLG LKAFPHRDFP NLAGFNHHGH GINSSPAYAQ 540 HNQHSHQSQT PWQVGQQRIV IRNQHGENLV GILHETGSKD VVIICHGFQS IKERIPMVSI 600 ANVLERQGIS AFRFDFAGNG ESEGSFMYGN YRREAEDLRA VVQHFCNKDR PVTAIIGHSK 660 GGNVVLLYAS KYNDVPTVVS ISGRFNLEKG MEGRLGKDFL QRIKQNGFID VFNRKGKFEY 720 RVTQESLMDR LSTDTRAACL LIDQNCRVLI IHGSMDRIVP AKDALEFARF IRNHKLHIVE 780 GADHEYTSHQ DELTKIVLDF VREGRQEKNT TQDSQSCSGG VRSRI

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence

MMKGLVMDES MSNLTSTSGE ISASSSATRI ETTFASTNQA PPLKKKRSLP GNPDPDAEVI  60
ALSPKSLLAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRPKMEVI RKKVYVCPET  120
TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK ICGTKEYRCD  180
CGTLFSRRDS FITHRAFCDA LAEESARAIP TLPNSLLSSS QQQVEIAGSS VSHNLSTLQQ  240
QQPQVFHSQA LQALAVKREQ DITYLLSGRS VAAADHSLPP WLACSSSFLD PLSQNIHENP  300
SQTQNPSSTT TTLAPFQTPT AASSPISPHM SATALLQKAA QMGVTMSSNK PLQSPAPVAM  360
QRPHHMSGTA GFIGSTSNPA GSAVGLSARD HGLAFFGNKA AAMEQVVAAT NSTAGAPSLL  420
HDMMSSLSST SGFDGSSSSF EQSFNGIFNP KLLGNNSNNF QEIHQQNFQK TAESQLSRSE  480
NNHERRGSSV SSNIIGGNSN NDGLTRDFLG LKAFPHRDFP NLAGFNHHGH GINSSPAYAQ  540
HNQHSHQSQT PWQVGQQRIV IRNQHGENLV GILHETGSKD VVIICHGFQS IKERIPMVSI  600
ANVLERQGIS AFRFDFAGNG ESEGSFMYGN YRREAEDLRA VVQHFCNKDR PVTAIIGHSK  660
GGNVVLLYAS KYNDVPTVVS ISGRFNLEKG MEGRLGKDFL QRIKQNGFID VFNRKGKFEY  720
RVTQESLMDR LSTDTRAACL LIDQNCRVLI IHGSMDRIVP AKDALEFARF IRNHKLHIVE  780
GADHEYTSHQ DELTKIVLDF VREGRQEKNT TQDSQSCSGG VRSRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	113	KLKQRPKMEVIRKK
2	102	115	KLKQRPKMEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-109	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO66950