PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO66244

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

E2F/DP

Protein Properties

Length: 640aa MW: 72860.1 Da PI: 7.7409

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66244	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	74.6	1.1e-23	468	547	4	71
E2F_TDP 4 ksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 +Lr+++ + +++k e+ gi+t+neva+e+++e ++kn rRR+YD+lNVL+a+++i+k ek+eirwkg OMO66244 468 GGLRQFSLM---VCKKLESkGITTYNEVADEIIEEfataqsstpgsleefHEKNVRRRVYDALNVLMAMDIITK-EKKEIRWKG 547 589999998...**9999**************************999*****************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MKKTHFPYSP DRSWLLPVLI ISIISVTFLL ALTFTHGKSS SSDTDDDDFS FHKPKFSFSE 60 RDYRRLPKLP RFAYLISGTK GDGPSIRRLL QAVYHPRNYY VLHLDLEASD SERLELAKYV 120 KSEGVIREFG NVMVIGKADL VTYKGPTMIA STLHAVAILL KEAKDWDWFL NLSASDYPLM 180 SQDDMVHIFS YLPRDLNFLE HTSSIGWKEY QRGRPIIIDP GLYHTKKSGV FWAKEKRSLP 240 ASFKLFMGSE WVLLTKSFLE FCIWGWDNLP RTLLMYYTNF LSSPEGYFHT VICNHKDYQN 300 TTVNHDLHYI KWDNPPKQQP VTLTLEHFND MVQSGAPFAR RFAKDDPVLN KIDKELLRRS 360 HGQFTPGGWC IGGSFSDVLS SLSGLESRDK NRDLSLEIRL FTISTNTFRM MDDPQFEDSP 420 SSEQSLVTTP TNASTSGSTC GINQSAVKQK NDNADGGTKK KVSRMPGGGL RQFSLMVCKK 480 LESKGITTYN EVADEIIEEF ATAQSSTPGS LEEFHEKNVR RRVYDALNVL MAMDIITKEK 540 KEIRWKGLST TTQASDLNEL KAQHIRLMAG ISKKAAYLKE LEEQVAGMEN IIQRNQKLVK 600 NDGTPKEGFT LPFILVQTSP NATVEIEISE DMRLVHIDFN

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MKKTHFPYSP DRSWLLPVLI ISIISVTFLL ALTFTHGKSS SSDTDDDDFS FHKPKFSFSE  60
RDYRRLPKLP RFAYLISGTK GDGPSIRRLL QAVYHPRNYY VLHLDLEASD SERLELAKYV  120
KSEGVIREFG NVMVIGKADL VTYKGPTMIA STLHAVAILL KEAKDWDWFL NLSASDYPLM  180
SQDDMVHIFS YLPRDLNFLE HTSSIGWKEY QRGRPIIIDP GLYHTKKSGV FWAKEKRSLP  240
ASFKLFMGSE WVLLTKSFLE FCIWGWDNLP RTLLMYYTNF LSSPEGYFHT VICNHKDYQN  300
TTVNHDLHYI KWDNPPKQQP VTLTLEHFND MVQSGAPFAR RFAKDDPVLN KIDKELLRRS  360
HGQFTPGGWC IGGSFSDVLS SLSGLESRDK NRDLSLEIRL FTISTNTFRM MDDPQFEDSP  420
SSEQSLVTTP TNASTSGSTC GINQSAVKQK NDNADGGTKK KVSRMPGGGL RQFSLMVCKK  480
LESKGITTYN EVADEIIEEF ATAQSSTPGS LEEFHEKNVR RRVYDALNVL MAMDIITKEK  540
KEIRWKGLST TTQASDLNEL KAQHIRLMAG ISKKAAYLKE LEEQVAGMEN IIQRNQKLVK  600
NDGTPKEGFT LPFILVQTSP NATVEIEISE DMRLVHIDFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02470.3	6e-72	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OMO66244