PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO66179

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 184aa MW: 20938.1 Da PI: 9.2787

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66179	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk F+ L H+r+H OMO66179 103 HECAICGKKFNIGQALGGHMRKH 125 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MKRGRESEES VNFESSIDIT KCLMLLSQGM DNNKPKLGDL VDDEEVFECK TCHRRFPSFQ 60 ALGGHRASHI KKPRSMGDHE NRKANKDSKF DLSLGITSNP KVHECAICGK KFNIGQALGG 120 HMRKHRASIY ESFDPYYFPM VPKLPVLSRS NRKRILSLDL NLTPLENDLE ALFGNMAPKL 180 DLRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	7e-48	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO66179