PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO66101

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 589aa MW: 63969.9 Da PI: 7.25

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66101	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.8e-09	391	438	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq OMO66101 391 SHSLAERVRREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 438 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
MENQFFLNAG IPPPAPPLHY GQSLSSSPMV AWQSLSSAME IQATELNCSP DQSQSQDCFM 60 NPNWEKSTDY GLQFESALSS MVSSPAASNS NNISNESFMI RELIGKLGSI GNSGEISPHL 120 PSYIKGNNST NTSCYSTPLN SPPKLSLPIM DGLVKEKLPS LGKSMGLNSS VAEFSADPGF 180 AERAAKFSCF GSRSFNGRTS QFGLNNNNNN NDTVAAYRSN PLTANAKLSR VSSSPSLKAM 240 GSQVGSVQVN NKNSPLQDRS ELANSQEEST LSEHNPNCDP GFKASKESNS RKRKAVPKGK 300 SKETSSSPNA AKESESKKEP KEKRCKSTET NGNENGSVKS KTEEEAKGSD GNAGDEKQSK 360 SNPNNNNNTK PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL QNLVPGCNKV 420 TGKALMLDEI INYVQSLQRQ VEFLSMKLAS VNTRLDFNVD SLMSKDIFQS NNTSLPHPIF 480 PIDSSAATAF LGQQQQQQPQ QNPALHSNIS NGTMTQCSLD PLDSAATICP SLNTHLPPIN 540 QFSESLPQYP TFYEGDLQTI VQMGFGQNSG QDMEALHGSN QVSHMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

MENQFFLNAG IPPPAPPLHY GQSLSSSPMV AWQSLSSAME IQATELNCSP DQSQSQDCFM  60
NPNWEKSTDY GLQFESALSS MVSSPAASNS NNISNESFMI RELIGKLGSI GNSGEISPHL  120
PSYIKGNNST NTSCYSTPLN SPPKLSLPIM DGLVKEKLPS LGKSMGLNSS VAEFSADPGF  180
AERAAKFSCF GSRSFNGRTS QFGLNNNNNN NDTVAAYRSN PLTANAKLSR VSSSPSLKAM  240
GSQVGSVQVN NKNSPLQDRS ELANSQEEST LSEHNPNCDP GFKASKESNS RKRKAVPKGK  300
SKETSSSPNA AKESESKKEP KEKRCKSTET NGNENGSVKS KTEEEAKGSD GNAGDEKQSK  360
SNPNNNNNTK PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL QNLVPGCNKV  420
TGKALMLDEI INYVQSLQRQ VEFLSMKLAS VNTRLDFNVD SLMSKDIFQS NNTSLPHPIF  480
PIDSSAATAF LGQQQQQQPQ QNPALHSNIS NGTMTQCSLD PLDSAATICP SLNTHLPPIN  540
QFSESLPQYP TFYEGDLQTI VQMGFGQNSG QDMEALHGSN QVSHMKVEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-109	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO66101