PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO65778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 130aa MW: 14714.9 Da PI: 9.977 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59 | 5.9e-19 | 27 | 74 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+i+n+++r v fskR++gi+KKA LS L++ + v+i+s++g++y+ OMO65778 27 KKIDNQRKRWVAFSKRKKGIFKKAAQLSMLTGETIGVVIISEQGRVYT 74 68*********************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence |
MDEGEASTSN SIPQRRKGCG RRKIEIKKID NQRKRWVAFS KRKKGIFKKA AQLSMLTGET 60 IGVVIISEQG RVYTSDNIDS VIEQFLSIKE YQAADESLKI KEAGEVLTKM KGDKCLALFD 120 LNKTPDEQFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 2e-17 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO65778 |