PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO64586

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 918aa MW: 100831 Da PI: 6.5102

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO64586	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.3	2.8e-18	321	420	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l ++++ OMO64586 321 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIMGFR 419 99************************555567778***********99899999999.*******************876.7777777776 PP - CS B3 98 r 98 + OMO64586 420 K 420 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence
MASMSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQSIFCDVF HSKDSGWREC 60 TSCGKRLHCG CIASRCLLEL LDGGGVNCIS CARKSGFNPI IGDEKPNGFG MVKGEAGQSQ 120 SNIVDNQLSG VSIENLKFIQ LSNNAESLGL RQLLQLHNDE SSGSLGQMKQ EEVFPTPREI 180 GSACISNINQ ASNGSVQAVK PNFFKPNVYE PLPQPNLSIS LGGTLASQNA FSGSIVDEKG 240 KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMAPQIRV ARPPAEGRGR NQLLPRYWPR 300 ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI 360 QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLIMGFRK 420 ATNNASVQET LPSAIPNGTL SSESFFSGVF ENLPIITGYS GLLQSLKGSN DPHLNALSKH 480 LSSANGDISW QKSDKHEDRT REGLLLPSML APERKRTRNI GSKSKRLLID SQDALELKLT 540 WEEAQDLLRP PPSTKPSVVT IEDHDFEEYD EPPVFGKRSI FAVRSTGGQE QWAQCDSCSK 600 WRRLPVDALL PPKWTCADNN WDQSRSSCSA PDELTPRELE NLLRLNKDLK KRRTVAYQRP 660 AQEHESSGLD ALANAAILGD NVDNSGATSV ATTTRHPRHR PGCSCIVCIQ PPSGKGKHKP 720 TCTCNVCMTV KRRFKTLMMR KKKRQSEREA EIAQRNQQQQ QAWGPREEAE VDSSSKHVSS 780 HLDPSENEAR SSANELESKS QSNINLPIKV EANKGGIDLN CDPDREDDSQ LGTNRVSMMS 840 LLQVANLPLE TYLKENGLTS LVAEQQANSS SHAPPQTVDE GEAQDNNNSS FPSPTEEHES 900 REEENGDTGS DRAENNEP

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence

MASMSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQSIFCDVF HSKDSGWREC  60
TSCGKRLHCG CIASRCLLEL LDGGGVNCIS CARKSGFNPI IGDEKPNGFG MVKGEAGQSQ  120
SNIVDNQLSG VSIENLKFIQ LSNNAESLGL RQLLQLHNDE SSGSLGQMKQ EEVFPTPREI  180
GSACISNINQ ASNGSVQAVK PNFFKPNVYE PLPQPNLSIS LGGTLASQNA FSGSIVDEKG  240
KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMAPQIRV ARPPAEGRGR NQLLPRYWPR  300
ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI  360
QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLIMGFRK  420
ATNNASVQET LPSAIPNGTL SSESFFSGVF ENLPIITGYS GLLQSLKGSN DPHLNALSKH  480
LSSANGDISW QKSDKHEDRT REGLLLPSML APERKRTRNI GSKSKRLLID SQDALELKLT  540
WEEAQDLLRP PPSTKPSVVT IEDHDFEEYD EPPVFGKRSI FAVRSTGGQE QWAQCDSCSK  600
WRRLPVDALL PPKWTCADNN WDQSRSSCSA PDELTPRELE NLLRLNKDLK KRRTVAYQRP  660
AQEHESSGLD ALANAAILGD NVDNSGATSV ATTTRHPRHR PGCSCIVCIQ PPSGKGKHKP  720
TCTCNVCMTV KRRFKTLMMR KKKRQSEREA EIAQRNQQQQ QAWGPREEAE VDSSSKHVSS  780
HLDPSENEAR SSANELESKS QSNINLPIKV EANKGGIDLN CDPDREDDSQ LGTNRVSMMS  840
LLQVANLPLE TYLKENGLTS LVAEQQANSS SHAPPQTVDE GEAQDNNNSS FPSPTEEHES  900
REEENGDTGS DRAENNEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	731	742	KRRFKTLMMRKK
2	731	744	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO64586