PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO64504

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 419aa MW: 47007.7 Da PI: 6.2897

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO64504	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.9	1.9e-53	21	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 lppGfrFhPtdeel+++yL+ kv + ++ i+evd++++ePw+Lp+ +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g+l OMO64504 21 LPPGFRFHPTDEELITFYLASKVFNGSFCG-VEIAEVDLNRCEPWELPEVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsSGALL 120 79***********************877.45***********8888999***********************************9978889 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfykgrap+gekt+Wvmheyrl OMO64504 121 GMKKTLVFYKGRAPRGEKTKWVMHEYRL 148 **************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MLAVEELLCE LVGDEVNEQG LPPGFRFHPT DEELITFYLA SKVFNGSFCG VEIAEVDLNR 60 CEPWELPEVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASSGALL 120 GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSYRHTCKE EWVICRIFHK AGEKKNGLVQ 180 GQSYILEVSS TPTTSLPPLL ETTTILESQT QTRSPMQNPY LIHRQENDLK SLININPVVS 240 QSQSPLFQGN GLIQVQPSFS VSATISNSST TDKKNTVTNA NNNNPNPNPN PNPSASMLFK 300 SLLSHQDYYY CNLNKEQEAT VPKQCKTEAS FSHFQLPLVD QHATLNSVHH QNQNQNPLFF 360 DMDSSSGVLG FSQGQGVTAG DNTTPSHDMS TSIAFNRATL QMLLDPPFRP SAESWPLDC

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MLAVEELLCE LVGDEVNEQG LPPGFRFHPT DEELITFYLA SKVFNGSFCG VEIAEVDLNR  60
CEPWELPEVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASSGALL  120
GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSYRHTCKE EWVICRIFHK AGEKKNGLVQ  180
GQSYILEVSS TPTTSLPPLL ETTTILESQT QTRSPMQNPY LIHRQENDLK SLININPVVS  240
QSQSPLFQGN GLIQVQPSFS VSATISNSST TDKKNTVTNA NNNNPNPNPN PNPSASMLFK  300
SLLSHQDYYY CNLNKEQEAT VPKQCKTEAS FSHFQLPLVD QHATLNSVHH QNQNQNPLFF  360
DMDSSSGVLG FSQGQGVTAG DNTTPSHDMS TSIAFNRATL QMLLDPPFRP SAESWPLDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-109	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO64504