PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO63890
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 312aa    MW: 35398.1 Da    PI: 5.313
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO63890genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-1975123355
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  OMO63890  75 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 123
               9*******.**********954...4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MCGGAIIAEF IPPRNRSRRV TASDIWPDSL FSKFNDLSQL DHDDSLSHFK RSQPQPSSGE  60
ELVEKKPKKQ RKNLYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDREARK  120
IRGKKAKVNF PNEEDAFSTQ YNPTNFNNRT EINHWNHSPN PNPNLSVYQQ PARNSHLNGY  180
GFNYDLNEIG GYATDPIVIS GEENSGSGSE GAYSVNQNLN FCYTPVKAEE EEKREEPVNK  240
VAAVEVREEA NEVQKLSEEL MAYENFMKFY QLPYLDGQSP TQNAVAPQES VVGELWSFDD  300
DGVAVPVTST AM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-31ERF family protein