PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO63761

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HB-other

Protein Properties

Length: 1465aa MW: 160507 Da PI: 7.3962

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO63761	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.7	7.2e-07	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + +s++e +e+++ lg+t +qV+ +F +R++ +k OMO63761 69 KRPRDLLNPKAVKYMQAIFSIKDAISKKESREISALLGVTVTQVREFFASQRTRVRK 125 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1465 aa Download sequence
MDVFNENFSE VEVGNTVESL QKFIDLQREL FHSQIDQLQK VVITQCKLTG VNPLAQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQAIFSIK DAISKKESRE ISALLGVTVT QVREFFASQR 120 TRVRKQVRLS REKALRSNAR KETEEGVVPN GSDTMIPVEP VPLNSVGPVN AEEAPSCSTQ 180 DDALTDMDEL DKRFVENIFT KMGKEETFSG QVKLMEWILR IQNPSVLYWF LTKGGVMILA 240 TWLSQAAVEE QTTVLCVILK VFCHLPLQKA LPEHMSAVLQ SVNKLRLYRF SDISNRARTL 300 ISRWSKMFAR SQAAKKPNGL KSATEAQNEM LLKQSINEIM GDESWQSNIE SSEGTLAISN 360 VRKLESPQVL KLLPASTDDS SKKNILGGSH GRERRKVQLV EQPGQKMAGK SSQTTRTVPA 420 SQSRPMSADD IQKAKMRAQY MQSKYGKTGS SNGMNESKAE GPNKPSTSQA SISPPVSKVQ 480 AQPAEDQKKP VILPPKTSNN LDTSLDPKQN MESKESPWEK CQKVKIPWYT PPEVKLDDLW 540 RVGSGENSKE VDVQKNRNRR ERETFYYSIQ EIPFNPKEPW DREMDYDDTL TPEIPTEQPP 600 DAECTETQVT NGEHVNSATT TLGPSSSQIG AGGGGGVAAE PDLELLAVLL KNPALVFALT 660 SGQAGNLTSQ DTVKLLDLIK AGGAGIPKDN GKKVEEKVEV SLPSPTPSSN PGTSGWKPKV 720 VRNPFSQQSQ MGNRSVGQAS VGVGGAAPVA ERLPQQEANG LSLAQQLAAA MSQLLPQLSQ 780 SNAMTAEKQQ QSSNGAFSHH GLPSNSPSMQ ASASEIALTM NNLHTANTSS LTSLSAAGRP 840 PLRVETMTSM KPVPVSMTPN APEKLHSSYS MSPLMPTLSR PQTPPQLRPQ LPHVTDPSLQ 900 THPYSSRPLV GNIGTMSDPW RARQGLASNP YPQTNQNNYN ASFGGSMQPQ LRSGPPWEGN 960 EYVGNDGFES WSPDNSPNRS SEHVPGRNYL EPRMNPGWNY RPERTWQRAY HSPILSDNSN 1020 YNIPRRWHFG HSHDHRDHQH NITKEGEKIF RLGLGADIGL AAGKALTGYL SGSTAIIADA 1080 AHSVSDVVLS GVALWSFKAA KAPKDEEHPY GHGKFETLGA LGISCMLLAT AGGIGWHALD 1140 ILAGLFSTAP EVLDSHSLAH GHSHHHGIDM DHPILALNMT IVAICIKEGL YWITKRAGEK 1200 QNSGLMKANA WHHRADAISS VVALIGVGGS ILGVKFLDPL AGLVVSGMIL KAGLEAGYQS 1260 VLELVDAAIP AEQLEPINQT ILQVEGVKGC HRLRGRRAGS NLYLDVHIVV DPFSSVSAAH 1320 GIGENVRHQI YKSHPEVTEV FIHIDPAYVE FSPDVIDQKG SSKRIMEQNS DISAREDNVE 1380 AIVSHVFSSK FPEKFVVERI NHHMLQGKML LEVEVSLPQD QDMMIRDAME AAKEAEEEIL 1440 NAASNIVHVK VQLRLGRPIP QFKYT

Sequence ? help Back to Top

Protein Sequence Length: 1465 aa Download sequence

MDVFNENFSE VEVGNTVESL QKFIDLQREL FHSQIDQLQK VVITQCKLTG VNPLAQEMAA  60
GALSIKIGKR PRDLLNPKAV KYMQAIFSIK DAISKKESRE ISALLGVTVT QVREFFASQR  120
TRVRKQVRLS REKALRSNAR KETEEGVVPN GSDTMIPVEP VPLNSVGPVN AEEAPSCSTQ  180
DDALTDMDEL DKRFVENIFT KMGKEETFSG QVKLMEWILR IQNPSVLYWF LTKGGVMILA  240
TWLSQAAVEE QTTVLCVILK VFCHLPLQKA LPEHMSAVLQ SVNKLRLYRF SDISNRARTL  300
ISRWSKMFAR SQAAKKPNGL KSATEAQNEM LLKQSINEIM GDESWQSNIE SSEGTLAISN  360
VRKLESPQVL KLLPASTDDS SKKNILGGSH GRERRKVQLV EQPGQKMAGK SSQTTRTVPA  420
SQSRPMSADD IQKAKMRAQY MQSKYGKTGS SNGMNESKAE GPNKPSTSQA SISPPVSKVQ  480
AQPAEDQKKP VILPPKTSNN LDTSLDPKQN MESKESPWEK CQKVKIPWYT PPEVKLDDLW  540
RVGSGENSKE VDVQKNRNRR ERETFYYSIQ EIPFNPKEPW DREMDYDDTL TPEIPTEQPP  600
DAECTETQVT NGEHVNSATT TLGPSSSQIG AGGGGGVAAE PDLELLAVLL KNPALVFALT  660
SGQAGNLTSQ DTVKLLDLIK AGGAGIPKDN GKKVEEKVEV SLPSPTPSSN PGTSGWKPKV  720
VRNPFSQQSQ MGNRSVGQAS VGVGGAAPVA ERLPQQEANG LSLAQQLAAA MSQLLPQLSQ  780
SNAMTAEKQQ QSSNGAFSHH GLPSNSPSMQ ASASEIALTM NNLHTANTSS LTSLSAAGRP  840
PLRVETMTSM KPVPVSMTPN APEKLHSSYS MSPLMPTLSR PQTPPQLRPQ LPHVTDPSLQ  900
THPYSSRPLV GNIGTMSDPW RARQGLASNP YPQTNQNNYN ASFGGSMQPQ LRSGPPWEGN  960
EYVGNDGFES WSPDNSPNRS SEHVPGRNYL EPRMNPGWNY RPERTWQRAY HSPILSDNSN  1020
YNIPRRWHFG HSHDHRDHQH NITKEGEKIF RLGLGADIGL AAGKALTGYL SGSTAIIADA  1080
AHSVSDVVLS GVALWSFKAA KAPKDEEHPY GHGKFETLGA LGISCMLLAT AGGIGWHALD  1140
ILAGLFSTAP EVLDSHSLAH GHSHHHGIDM DHPILALNMT IVAICIKEGL YWITKRAGEK  1200
QNSGLMKANA WHHRADAISS VVALIGVGGS ILGVKFLDPL AGLVVSGMIL KAGLEAGYQS  1260
VLELVDAAIP AEQLEPINQT ILQVEGVKGC HRLRGRRAGS NLYLDVHIVV DPFSSVSAAH  1320
GIGENVRHQI YKSHPEVTEV FIHIDPAYVE FSPDVIDQKG SSKRIMEQNS DISAREDNVE  1380
AIVSHVFSSK FPEKFVVERI NHHMLQGKML LEVEVSLPQD QDMMIRDAME AAKEAEEEIL  1440
NAASNIVHVK VQLRLGRPIP QFKYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Link Out ? help Back to Top
Ensembl	OMO63761