PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO63164

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ERF

Protein Properties

Length: 421aa MW: 47517.9 Da PI: 4.6773

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO63164	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.4	2e-14	93	145	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++ + W A I g +k +lg+f+t+eeAa+a++ a+ +l+ge OMO63164 93 SVYRGVSRNSDFKTWQAKISR----GtTHKGLYLGTFDTEEEAARAYDIAAIRLRGE 145 78******9999888....5446************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MLRRYPDRFD AFLWDNSDLF KKPKTVYIGG YADEISAAKS YDMAALKLWG IYALLNFPRS 60 YYKKEMDEMI FYTKDDYLHN LRRRSTKFSK GLSVYRGVSR NSDFKTWQAK ISRGTTHKGL 120 YLGTFDTEEE AARAYDIAAI RLRGEKYAVT NFDINEYDVA TILQNPLMVP IRRKGAASKK 180 VVLQSDGFPK KKKSSITAEI PRLNVEGDEK LGSIYRQFEK LPPSSKQNLS QSNEDYPILN 240 SSSIPPVAFQ NPTVFQGFNG IGSFKINGNP DGQSTISETD QNFAALDNQQ FTNQNPVEQE 300 IQSELNLMGE EEDYASIFLN LSLNDDEYGV SLEQLFDDQN PINFQTNPTS DRNPVVNGSY 360 KNKSQASAGD GIFDNLPSLI EINDDDVSIG AAMVKNPVTT PNIGENFFED IDQLLSSCFN 420 N

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MLRRYPDRFD AFLWDNSDLF KKPKTVYIGG YADEISAAKS YDMAALKLWG IYALLNFPRS  60
YYKKEMDEMI FYTKDDYLHN LRRRSTKFSK GLSVYRGVSR NSDFKTWQAK ISRGTTHKGL  120
YLGTFDTEEE AARAYDIAAI RLRGEKYAVT NFDINEYDVA TILQNPLMVP IRRKGAASKK  180
VVLQSDGFPK KKKSSITAEI PRLNVEGDEK LGSIYRQFEK LPPSSKQNLS QSNEDYPILN  240
SSSIPPVAFQ NPTVFQGFNG IGSFKINGNP DGQSTISETD QNFAALDNQQ FTNQNPVEQE  300
IQSELNLMGE EEDYASIFLN LSLNDDEYGV SLEQLFDDQN PINFQTNPTS DRNPVVNGSY  360
KNKSQASAGD GIFDNLPSLI EINDDDVSIG AAMVKNPVTT PNIGENFFED IDQLLSSCFN  420
N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	193	RRKGAASKKVVLQSDGFPKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-52	AP2 family protein

Link Out ? help Back to Top
Ensembl	OMO63164