PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO63133
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 380aa    MW: 42698.1 Da    PI: 6.3982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO63133genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011303325123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               + C +Cgk F  + + ++H +++
  OMO63133 303 FMCRKCGKAFAVRGDWRTHEKNC 325
               89*****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    
MGDYPYSNLF SGWFKFNPLQ HYPSLNQPPP PQQQQQQPSS YTQTFYGSFI NNNYNNNNTN  60
IETNNIINPF FHYQNSSSPP SPPVREALPL LSLSPTRHNN KDQEQVLQDE ENHHQDYQDQ  120
DLQDHSCTAM DVVAGKESEG GGGGGGGEEE DETVTVALHI GLPSPSASEL ASVLSSSSEI  180
TDKDNNGEGD DSGYPISRLN KGQYWIPTPS QILIGPTQFS CPVCCKTFNR YNNMQMHMWG  240
HGSQYRKGPE SLRGTQPTGM LRLPCYCCAP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI  300
KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GNGHAAYGID  360
GLDEDDEPAS EVEQDNESMQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-137C2H2 family protein