PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO62571

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 452aa MW: 49807.7 Da PI: 9.9909

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO62571	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.8e-06	212	234	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg+ F ++nL+ H+ + H OMO62571 212 SCPDCGEIFMKPENLELHQAVrH 234 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MAGPTQQRKP SKETHQINQK KRCQKNDKLQ PSWSVVKGLF FGKQEQHQQQ KKQEQQPPPQ 60 PQPQQQKQQQ QKKKKQKQQQ PEQVEETGKK CKKMRCSGSL CSNTKVMHRP ETASPELQKK 120 RAALSSNNID ASSRSMKAPA LHELNGAVSA TNSSLSVSSA TVSASASASS SAGGSFRGMP 180 FRRFSGCYEC RMVVDPVLGI ARDPSLRSSI CSCPDCGEIF MKPENLELHQ AVRHAVSELG 240 PEDTSKNIVE IIFQSSWLKK QTPICQIDRI LKVHNTQRTI SKFEEYRDSI KSKANKLPKK 300 HPRCIADGNE LLRFHCTTFA CSLGLNGSSN LCNSIPNCNV CSIIKNGFKV AQGQESSSGK 360 GILTTATSGK AHDKAAGVVE ESNGSNNNNQ NEKRAMLVCR VIAGRVKKSM EGSMEDYDSV 420 AGAVGVYSNL DELYVFNPKA ILPCFVVIYR GF

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MAGPTQQRKP SKETHQINQK KRCQKNDKLQ PSWSVVKGLF FGKQEQHQQQ KKQEQQPPPQ  60
PQPQQQKQQQ QKKKKQKQQQ PEQVEETGKK CKKMRCSGSL CSNTKVMHRP ETASPELQKK  120
RAALSSNNID ASSRSMKAPA LHELNGAVSA TNSSLSVSSA TVSASASASS SAGGSFRGMP  180
FRRFSGCYEC RMVVDPVLGI ARDPSLRSSI CSCPDCGEIF MKPENLELHQ AVRHAVSELG  240
PEDTSKNIVE IIFQSSWLKK QTPICQIDRI LKVHNTQRTI SKFEEYRDSI KSKANKLPKK  300
HPRCIADGNE LLRFHCTTFA CSLGLNGSSN LCNSIPNCNV CSIIKNGFKV AQGQESSSGK  360
GILTTATSGK AHDKAAGVVE ESNGSNNNNQ NEKRAMLVCR VIAGRVKKSM EGSMEDYDSV  420
AGAVGVYSNL DELYVFNPKA ILPCFVVIYR GF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	93	KKKKQKQQQPEQVEETGKKCKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-102	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO62571