PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO62461
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 342aa    MW: 38398.5 Da    PI: 6.0115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO62461genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-13138189155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  OMO62461 138 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 189
               79****************************...9******************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MALEAVVFQQ ADLFGYNSKD LYSLLGGNWS YDFGLEEDEN QEEKICLEYF PDNQTISSET  60
NSTFLHHHHH GDQWTSSSSP TSNLQVPSQP HFNDATNNTT GSTSCDPSSA AAMDTSTNNR  120
PKRRRSKTRK NKEEIENQRM THIAVERNRR KQMNEYLSVL RSLMPESYVQ RGDQASIIGG  180
AINFVKELEH RLQLLSAQKE VKERSDGGNN GGSSSPFAEF FTFPQYSTLG DHHHQHNSIS  240
MNETVVDDQT SQSAIADIEV TMVESHANLK IRSKTRRPGQ LLKMVSGLNS MRLSILHLNV  300
TTVDQTVLYS LSVKVEDDCK LTSVDDIATA VNQLLGRIQE VC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139150RMTHIAVERNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-78bHLH family protein