PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO62106

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 432aa MW: 47694.3 Da PI: 5.2728

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO62106	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	3.9e-14	227	274	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N++f+ Lr ++P++ +K + a+i+ A++YIk+L OMO62106 227 TTKHFATERERRVHLNDRFQALRNMVPNP-----TKIDRASIVGDAIDYIKEL 274 579************************.....9**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MKVYEQSGCF DPNSIADCQS LMGALPGASS TNTLSPLEDN LNLSSFNHED ASASASAAAM 60 QMEIQQHYVL DANTTTNNTP LIPQLTQELS YEQSNWDADQ QSFTMLPSSS SPETAYPPTP 120 DLLNLFHLPR CSFLPNSSIS FENASNSSSV VYDPLFHLNL HPQPPVFREL LQSLPHGYTL 180 PADHDTEATG GGGLYHDGDN GILEFTRDIS LPAHGKGRGR GTAAGKTTKH FATERERRVH 240 LNDRFQALRN MVPNPTKIDR ASIVGDAIDY IKELLRTVDE LKLLVEKKRC GQDRSKRLKT 300 EDGASAADAG DVENKPLLDP DQCYNTSLRS SWLQRKSKDT EVDVRIIDDE VTIKLVQRKK 360 INCLLFVSRL LDDLQLDLHH VAGGNIGDYH SFLFNTKIYE GSSVYASAIA NKLIEVVDRQ 420 YAAAPPTTST CL

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MKVYEQSGCF DPNSIADCQS LMGALPGASS TNTLSPLEDN LNLSSFNHED ASASASAAAM  60
QMEIQQHYVL DANTTTNNTP LIPQLTQELS YEQSNWDADQ QSFTMLPSSS SPETAYPPTP  120
DLLNLFHLPR CSFLPNSSIS FENASNSSSV VYDPLFHLNL HPQPPVFREL LQSLPHGYTL  180
PADHDTEATG GGGLYHDGDN GILEFTRDIS LPAHGKGRGR GTAAGKTTKH FATERERRVH  240
LNDRFQALRN MVPNPTKIDR ASIVGDAIDY IKELLRTVDE LKLLVEKKRC GQDRSKRLKT  300
EDGASAADAG DVENKPLLDP DQCYNTSLRS SWLQRKSKDT EVDVRIIDDE VTIKLVQRKK  360
INCLLFVSRL LDDLQLDLHH VAGGNIGDYH SFLFNTKIYE GSSVYASAIA NKLIEVVDRQ  420
YAAAPPTTST CL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	2e-96	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO62106