PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO61895

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CPP

Protein Properties

Length: 609aa MW: 66211.9 Da PI: 8.4831

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO61895	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.7	2.6e-14	155	194	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+C+Ck+s+Clk+YC+Cfaag +C+ C+C +C+N+ e+ OMO61895 155 KQKPCSCKNSRCLKLYCDCFAAGIYCNG-CNCLNCHNNVEN 194 79************************.******9875 PP
2	TCR	49.5	8.4e-16	239	278	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgCnCkks ClkkYCeC++a+ Cse CkC dCkN e OMO61895 239 KHNKGCNCKKSGCLKKYCECYQANILCSEICKCMDCKNFE 278 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MEQGETVSDF APKKLARQLD FTAICRASAN ATLPDPPMHL QSQPQPQTQW QSKTPVQAKH 60 QQQPQPQELQ LRLYIQPPAV QSPPQPQLKP QSPSMPQIKT RPPPPPSLQP QVAVVQRVPH 120 PVQKLPLPTF QMSKQESPRS RPRAQTEAKD GTPKKQKPCS CKNSRCLKLY CDCFAAGIYC 180 NGCNCLNCHN NVENETARQE AVGVTLDRNP NAFRPKIASS PHRPQDTGVD PHDVQMVGKH 240 NKGCNCKKSG CLKKYCECYQ ANILCSEICK CMDCKNFEGS EERRALVHGD HNSMAYMQQA 300 ANAAISGAIG SSGYGAPLAS KKRKGEELLF GVAVNDQSLQ EIVQLQQENL LRNRVSASSP 360 LSAPVSRTAH TASWGSSKLT YRSPLADSLQ SGHVKDLCSL LVLVSSEAGR ALAAEKSSKV 420 DPIETIVSSG QAGLMSQKGN GAVNGATDKC NGENKADTDR SGNSITDIDD MHNGRPLSPA 480 TRALMCDEED AIFMGAGSPN LLADNTQNMT QKLPNGAECT EVYAQQERFV LTKFRDFLNE 540 LITLGSINET RFTEGRSEQE DIKNGAVKSG IQTGGMKESY RNGIVKSPTP TRAHPTVAVV 600 SSPLTPRLP

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MEQGETVSDF APKKLARQLD FTAICRASAN ATLPDPPMHL QSQPQPQTQW QSKTPVQAKH  60
QQQPQPQELQ LRLYIQPPAV QSPPQPQLKP QSPSMPQIKT RPPPPPSLQP QVAVVQRVPH  120
PVQKLPLPTF QMSKQESPRS RPRAQTEAKD GTPKKQKPCS CKNSRCLKLY CDCFAAGIYC  180
NGCNCLNCHN NVENETARQE AVGVTLDRNP NAFRPKIASS PHRPQDTGVD PHDVQMVGKH  240
NKGCNCKKSG CLKKYCECYQ ANILCSEICK CMDCKNFEGS EERRALVHGD HNSMAYMQQA  300
ANAAISGAIG SSGYGAPLAS KKRKGEELLF GVAVNDQSLQ EIVQLQQENL LRNRVSASSP  360
LSAPVSRTAH TASWGSSKLT YRSPLADSLQ SGHVKDLCSL LVLVSSEAGR ALAAEKSSKV  420
DPIETIVSSG QAGLMSQKGN GAVNGATDKC NGENKADTDR SGNSITDIDD MHNGRPLSPA  480
TRALMCDEED AIFMGAGSPN LLADNTQNMT QKLPNGAECT EVYAQQERFV LTKFRDFLNE  540
LITLGSINET RFTEGRSEQE DIKNGAVKSG IQTGGMKESY RNGIVKSPTP TRAHPTVAVV  600
SSPLTPRLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-109	CPP family protein

Link Out ? help Back to Top
Ensembl	OMO61895