PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO61478
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 272aa    MW: 30906.8 Da    PI: 4.9265
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO61478genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.61.6e-16131621128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.............kvkaeekew...yfFskrdkkyatgkrknratksgyWk 84 
               lppGfrF+Pt++e+++++ ++ +e+  l+    i+ +d+y++ePw+L  k             k+k+e+ke+       k+++k++t+++ +r+++ g Wk
  OMO61478  13 LPPGFRFKPTEQEILKYFVRPAIETGFLRS--PITCCDLYTSEPWNLFdKravdcfwiytplkKLKNENKEIsmsIATQKKKRKTKTKENIERTARCGSWK 111
               79*********************9999777..7**************6347899999999998676777766433444555556667778889999***** PP

       NAM  85 atgkdkevlskkgelvglkktLvfy........kgrapkgektdWvmheyrl 128
               ++   k++++  g+l g  +   +           +  k +   W+mhey+l
  OMO61478 112 EKTL-KDIKDCAGKLLGHGRYYLYDpkeglglgFDDGDKDHDDLWFMHEYTL 162
               7654.778877677766555544445444443334555666899******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MLRYFVDIGE GSLPPGFRFK PTEQEILKYF VRPAIETGFL RSPITCCDLY TSEPWNLFDK  60
RAVDCFWIYT PLKKLKNENK EISMSIATQK KKRKTKTKEN IERTARCGSW KEKTLKDIKD  120
CAGKLLGHGR YYLYDPKEGL GLGFDDGDKD HDDLWFMHEY TLPKDEGLNF GAICKVEYKP  180
NSGKKPPNNI NINNSALVAS DTHKPKADSC GDDDHEQGPI PKKPRLEDAT ASGAFSINDD  240
FASLDDDDEF LENLCTVLTD SDETQILECL PD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.17e-10NAC family protein