PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO61450
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 292aa    MW: 31873.5 Da    PI: 4.6908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO61450genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-193584255
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  OMO61450 35 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 84
              678******.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MNLNNSKTNS PSSSKNKRKQ QQQQQQQPQQ QQETRFLGVR RRPWGRYAAE IRDPSTKERH  60
WLGTFDTAEE AALAYDRAAR SMRGSKARTN FVYSDMPAGS SVTSIISPDE SHHDMSSIFS  120
INPTFHQQND ITNHNQLFFT TTHQDPFNAV SCQFSSSGIT AAGDGWTQES DTDTLGPYTP  180
ITGVMDAGNG GSQQFSDNSE LPPLPPDVSS TCYGSGIGGS DMGYGACNWD ETGVFGFSDQ  240
TSNGFDLGVS GSFLGFNSYE LVQHSPLFGR LPSVPDTVTD GFELGSSSGY FF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.16e-36ERF family protein