PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO60784

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 433aa MW: 48085.8 Da PI: 8.228

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60784	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H OMO60784 64 YVCEICNQGFQRDQNLQMHRRRH 86 9*********************9 PP
2	zf-C2H2	16.1	3.2e-05	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ OMO60784 141 WVCEKCSKGYAVQSDYKAHLKTC 163 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MLDNSNNNTS NSNSAAFPSS SSDPLTPLEN GATHKRKRKP AGTPDPDAEV VSLSPKTLLE 60 SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKRETQEV KKRVFVCPEP SCLHHDPCHA 120 LGDLVGIKKH FRRKHSNQKQ WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE 180 SFIEHQDACT VRRVQPELQA LQPACSSRTA SSTSPSSDAN FSMAPLPGLP LQKSTEPVFL 240 YSHASTSDHH HQQQQQQQLQ HNLELQLLPS SNTTHSSRNS DENYGTHLKL SIGSSDGGSS 300 EKMNESNSNA SETALEASRL KEFASEQLKL AMTEKAYAEK ARAEAKRQIE MAELEFASAK 360 RIRQQAQGEL EKAQMLKDQA TKKISSTIMQ ITCQACKHQF QTSTTAAAVL PAADETSLAM 420 SYMSSATTEG EVE

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MLDNSNNNTS NSNSAAFPSS SSDPLTPLEN GATHKRKRKP AGTPDPDAEV VSLSPKTLLE  60
SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKRETQEV KKRVFVCPEP SCLHHDPCHA  120
LGDLVGIKKH FRRKHSNQKQ WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE  180
SFIEHQDACT VRRVQPELQA LQPACSSRTA SSTSPSSDAN FSMAPLPGLP LQKSTEPVFL  240
YSHASTSDHH HQQQQQQQLQ HNLELQLLPS SNTTHSSRNS DENYGTHLKL SIGSSDGGSS  300
EKMNESNSNA SETALEASRL KEFASEQLKL AMTEKAYAEK ARAEAKRQIE MAELEFASAK  360
RIRQQAQGEL EKAQMLKDQA TKKISSTIMQ ITCQACKHQF QTSTTAAAVL PAADETSLAM  420
SYMSSATTEG EVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-150	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO60784