PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO60420

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 246aa MW: 27934.1 Da PI: 4.535

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60420	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l+d+++++G g W+t ++ g++R++k+c++rw++yl OMO60420 15 RGAWTAIEDQILIDYINLHGEGKWRTLPKAAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP
2	Myb_DNA-binding	49.5	9.6e-16	68	112	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ OMO60420 68 RGNITLDEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWHSV 112 7899****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MGRKPCCSKE EGLNRGAWTA IEDQILIDYI NLHGEGKWRT LPKAAGLKRC GKSCRLRWLN 60 YLRPDIKRGN ITLDEEDLII RLHNLLGNRW SLIAGRLPGR TDNEIKNYWH SVLSKRLLSS 120 SQVKEANRND DKINVIDAKL EHETALESES SDGSFTLPSS DEEINASFNF RMDFEIGEIS 180 NGSEGFASDF TQLCGYDFTD MNAEICEYGK YGKNDCCEAM VENDYVELEA NNFNLDSDFG 240 FLDAFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-62	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO60420