PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60046
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 595aa    MW: 67232.2 Da    PI: 8.2809
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60046genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.4e-18311111297
               HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
               +++ + +pk+f++++g+   +s    l+ +sg++W+v+l  rk++g+++l+kGW+eF +   Lk g fvvF+++g+ +f   v + 
  OMO60046  31 ATRAMAIPKQFIKKYGKC-MSSPAAFLRVPSGEVWKVEL--RKRDGKVWLKKGWREFSNHYSLKHGHFVVFSYEGKCNF--DVVIM 111
               556799*********755.455599**************..********************************998888..55554 PP
2B352.31e-16217306186
               EEEE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
        B3   1 ffkvltpsdvlks....grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 
               f+ v+ ps+v +     +rl +p  f+++h +k  +  ++tl +++g++W v++   +++++    l +GW  Fv++n++++gD++vF+l++
  OMO60046 217 FVVVMQPSYVYAGlqckCRLAIPIYFVRKHLMKDDC--EITLFNSDGKTWPVQFHQGGNGKKlyGSLNAGWDIFVHDNNIQVGDICVFELIN 306
               66777888887777777*************666445..8***************66555555445688*********************975 PP
3B354.71.9e-17398496199
               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
               f  v+ ps+v++s ++++p +fa ++  +++++ + ++ l  ++g+sW vk+ y  + ++++  +  GWk+F+ +n+L++g ++vF+++ +++f  +v+++
  OMO60046 398 FTVVMQPSYVHTS-LVCIPENFAMRYfkKMQPKMNHEVLLCLSDGKSWPVKY-YqlTDTGRSAKFCCGWKQFALDNDLEVGNVCVFEMVAETSF--KVTIY 494
               5566666777666.6*************777788889***************.4467888889999*********************9988888..99998 PP

               -S CS
        B3  98 rk 99 
               rk
  OMO60046 495 RK 496
               87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    
MTVGTRSGSM RMAGSRRGWR PAPWPGRDLH ATRAMAIPKQ FIKKYGKCMS SPAAFLRVPS  60
GEVWKVELRK RDGKVWLKKG WREFSNHYSL KHGHFVVFSY EGKCNFDVVI MDRTASEIEY  120
PYTRNHVSCN SKRFSDESES EDDESIQILE DIPPSRKNRE KSDLPCFRPH KKMKTSDSAD  180
YITESILKSE CMNPSRNKNA FALGRAIRDF KSENPFFVVV MQPSYVYAGL QCKCRLAIPI  240
YFVRKHLMKD DCEITLFNSD GKTWPVQFHQ GGNGKKLYGS LNAGWDIFVH DNNIQVGDIC  300
VFELINCIEI AFKVVIYQGE DGTFHKSSDL NDVFGQPKGN AGASYHPSQC VEDDKSRPLA  360
RKAGASSRSR GCWVQLNALQ KAKALQLARA FRSENPSFTV VMQPSYVHTS LVCIPENFAM  420
RYFKKMQPKM NHEVLLCLSD GKSWPVKYYQ LTDTGRSAKF CCGWKQFALD NDLEVGNVCV  480
FEMVAETSFK VTIYRKQAIE GANLGSSSAK SGANVIRIEC DESLEINAES NLLQHKGMPI  540
CNLQNQHLSE ETCSANNGEK TQEENTDSPG KDLEEAGQIF QTPSNGNVQD TDRQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-18B3 family protein