PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO59984

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 345aa MW: 38911.1 Da PI: 5.2747

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO59984	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.3	1.3e-08	289	323	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+ +gL+++q+ +WF N+R ++ OMO59984 289 KWPYPTEADKLCLAEATGLDQKQINNWFINQRKRH 323 569*****************************885 PP
2	ELK	36.2	1.3e-12	243	264	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ LlrKYsgy+++Lk+EFs OMO59984 243 ELKEKLLRKYSGYISTLKHEFS 264 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MEELYGFSSS DAPVYSMETN QTGENMLSPA GNYPVVSGFP SGFAEHMFGS TATGQLLSCS 60 SGISSDADSM VPEINHDHHQ KEEVSSAIRA KIASHPLYPK LLQAYIDCQK VGAPPEIVKV 120 LDEISGESNE ICKRSTAFIP PCFGADPELD HFMATMAPIF YCLKLFLASL KEKAALLHAT 180 FSCAAWKLWI WFEYEDFECG GCRTVAAHVA ILIHDEAVGS SEEELSGGEM EALEDYQTNE 240 DRELKEKLLR KYSGYISTLK HEFSKKKKKG KLPKEARQTL LDWWNVHYKW PYPTEADKLC 300 LAEATGLDQK QINNWFINQR KRHWKPSENM QIAVMDSLYG PFFHE

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MEELYGFSSS DAPVYSMETN QTGENMLSPA GNYPVVSGFP SGFAEHMFGS TATGQLLSCS  60
SGISSDADSM VPEINHDHHQ KEEVSSAIRA KIASHPLYPK LLQAYIDCQK VGAPPEIVKV  120
LDEISGESNE ICKRSTAFIP PCFGADPELD HFMATMAPIF YCLKLFLASL KEKAALLHAT  180
FSCAAWKLWI WFEYEDFECG GCRTVAAHVA ILIHDEAVGS SEEELSGGEM EALEDYQTNE  240
DRELKEKLLR KYSGYISTLK HEFSKKKKKG KLPKEARQTL LDWWNVHYKW PYPTEADKLC  300
LAEATGLDQK QINNWFINQR KRHWKPSENM QIAVMDSLYG PFFHE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	4e-72	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO59984