PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO59962

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 460aa MW: 52613 Da PI: 6.3267

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO59962	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.7	1.5e-19	204	250	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+teEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l OMO59962 204 KGQWSTEEDRKLVQLVEQYGLRKWSHIAQMLP-GRIGKQCRERWHNHL 250 799***************************.***********97 PP
2	Myb_DNA-binding	53	8.1e-17	256	298	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r+ WT+eEd l++ + +lG++ W+ Ia++++ gRt++++k++w+ OMO59962 256 RDTWTEEEDRVLIETHIELGNK-WAEIAKRLP-GRTENSIKNHWN 298 789*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MTSQGHQVQQ PMLFSDQNCL KPFMKDEFDP LETTPSSKGF VNNFQDFHDH HLEHQIDHVN 60 GSSSNPVFGL QTTCYDPFDH ASIFPHGYSA NNDIDFYECK PFAADHGNVG HGQVMDNFQS 120 GGFFNLSQRV INSDDIIMGS SENVGFNLPF DHFQEIKTMN FVVPDELSCV TAENAYYKKA 180 EMNKNKALAS TKKNSKVRKK SVVKGQWSTE EDRKLVQLVE QYGLRKWSHI AQMLPGRIGK 240 QCRERWHNHL RPDIKRDTWT EEEDRVLIET HIELGNKWAE IAKRLPGRTE NSIKNHWNAT 300 KRRQYSKRKC RSKYPRGSML QDYIRSLNLD NQPSCSNRCQ GKTSNINING IIAADINASA 360 KVSTYQPTQA LEFCPSNDRL VPEYDFNEVP DFSFDEKLML QETCSLDSLL DEIPGAPIDI 420 VADAYDHHDP GKSFKIDLMG LEVKKELDLI EMISGQQPNV

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MTSQGHQVQQ PMLFSDQNCL KPFMKDEFDP LETTPSSKGF VNNFQDFHDH HLEHQIDHVN  60
GSSSNPVFGL QTTCYDPFDH ASIFPHGYSA NNDIDFYECK PFAADHGNVG HGQVMDNFQS  120
GGFFNLSQRV INSDDIIMGS SENVGFNLPF DHFQEIKTMN FVVPDELSCV TAENAYYKKA  180
EMNKNKALAS TKKNSKVRKK SVVKGQWSTE EDRKLVQLVE QYGLRKWSHI AQMLPGRIGK  240
QCRERWHNHL RPDIKRDTWT EEEDRVLIET HIELGNKWAE IAKRLPGRTE NSIKNHWNAT  300
KRRQYSKRKC RSKYPRGSML QDYIRSLNLD NQPSCSNRCQ GKTSNINING IIAADINASA  360
KVSTYQPTQA LEFCPSNDRL VPEYDFNEVP DFSFDEKLML QETCSLDSLL DEIPGAPIDI  420
VADAYDHHDP GKSFKIDLMG LEVKKELDLI EMISGQQPNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-104	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO59962