PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59646
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 752aa    MW: 82213 Da    PI: 5.8078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59646genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.22e-1013917513374
      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
               +lL+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+  l+ + +  ++ lp s+t+  +++ ++ a+k+fsevsP+l+f ++t+Nqa+l
  OMO59646 391 DLLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNNP-VSPLPRSPTP-FDVIFKMGAYKVFSEVSPVLQFVNFTCNQALL 489
               79*************************************************984444.4456655554.78****************************** PP

      GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrvkpgEal 202
               ea++ ++++Hi+Dfdi+ G+QW++++q+L  R++g+pslRiT+++sp+ ++  el  ++e+L++fA+e+gv+fe +vl  + l++   +l ++r + +Ea+
  OMO59646 490 EALDDADQIHIVDFDIGFGAQWASFMQELPMRSRGAPSLRITAFASPSMHHPIELGLMRENLTQFANEIGVSFELEVLNFDCLDQSpySLPMFRSNDNEAV 590
               *****************************************************************************96665555444667778888**** PP

      GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
               aVn+ +   +   ++ +l++    +L++vk+lsPk+vv  ++ +d+ + +F +++++a++ y  l++sl+a    +s++ +k+Er+ll ++i++ v  +  
  OMO59646 591 AVNFPVWSSSS--QPSCLPN----LLRFVKQLSPKIVVSLDRGCDRIDLPFPQHVIHAFKSYINLLESLDAV-NVTSDAVNKIERFLLVPRIESTVLGRLH 684
               *****954444..4566666....*********************************************665.579********************99888 PP

      GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               +     e++  W+  +++aGF+pv++s+++++qa++++++ +++g++ve++++slvl+W++r L+s+SaWr
  OMO59646 685 A----PEKMPLWKTLFSSAGFSPVSFSNFTETQAECVVKRAPVRGFHVEKRQASLVLCWQQRDLISASAWR 751
               7....9****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    
LQAKGAVEIA GFASICQQDK WIKPQEANSF SFANSFYYNN EQEPTSVLHM RRSQSPPTSA  60
STLSSSFNGG AAGAGGGGNS TDNTTTTTAA TIAAPETPLP NNGKEEWATE LQPIPSELDL  120
VPGPGGGAQR CNLGLEDWET MLSEPAISPS QDHSLLRWIA GDVDDPSFGL KQLLQTGSTV  180
PNQGLDFEGN AGLGVVDQGP GFDPIGSLGS SGPVNVISSV APNLGGFPVS GFVQNPNNNN  240
GNGVVNNHKV LGATVGLNTN IQNPVFTSPA NNMGLPVSLP MLYHQQQQQG QFIESQEEKP  300
QILNQNPNFF LPLPQEQHLL QPLPKRLNPG NLDLSSQISK HPFPQHMGFT QGLQFVPQQQ  360
KPLKKVLGPG EEMAQQHQFQ LHQQQQATLF DLLYKAAELV GTGNFSHAQG ILARLNHQLS  420
PVGKPLQRAA FYFKEALQLL LLMNNNPVSP LPRSPTPFDV IFKMGAYKVF SEVSPVLQFV  480
NFTCNQALLE ALDDADQIHI VDFDIGFGAQ WASFMQELPM RSRGAPSLRI TAFASPSMHH  540
PIELGLMREN LTQFANEIGV SFELEVLNFD CLDQSPYSLP MFRSNDNEAV AVNFPVWSSS  600
SQPSCLPNLL RFVKQLSPKI VVSLDRGCDR IDLPFPQHVI HAFKSYINLL ESLDAVNVTS  660
DAVNKIERFL LVPRIESTVL GRLHAPEKMP LWKTLFSSAG FSPVSFSNFT ETQAECVVKR  720
APVRGFHVEK RQASLVLCWQ QRDLISASAW RC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-123GRAS family protein